Detailed information on CNT30193041


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CG84|UBI4P_NICSY, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30528288Secale cerealeEucalyptus grandis47.5468.4387.68917forward
CNT3044330Secale cerealePrunus dulcis46.9774.0886.64906forward
CNT30312779Secale cerealeCamelina sativa47.5476.9985.5917forward
CNT3073349Secale cerealeBrassica juncea43.9676.2686.56848forward
CNT30141570Secale cerealeLolium perenne4883.0592.12926forward
CNT3067522Secale cerealeLeersia perrieri47.4974.1185.81916forward
CNT30704859Secale cerealePrunus avium47.2875.4386.73912forward

Expression of CNT30193041

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MNLRVESIPNCRYYKQPQSQTKANITRSATS*

>peptide 2 (52 aa)
MTGGGWRNRRLAYLEEEDERALASLRSEEISRRDRRGAGLDRMCGEQTGGGGD

>peptide 3 (53 aa)
MPSLSWILALTLSMVSDDSTSRVMVLPVRVFTKICMPPRSLSTKWRVDSFWML*

>peptide 4 (72 aa)
KQLHRQELTVHHADGAPSEGWNPSGCCSPPRCGHPRAAYQQRSGAAGPGGCLPCPGSWPSRCRWCLRTQPPR*

>peptide 5 (65 aa)
SSSTARSLLSTTQTEHQVKGGILLDVVVRQGAAILELLTSKDQALLVRGDAFLVLDLGLHVVDGV*

>peptide 6 (63 aa)
MRRCWSGGIPSLSWILALTLSMVSDDSTSRVMVLPVRVFTKICICKYEDRTRVSYGTGISAVQ*

>peptide 7 (61 aa)
MRRCWSGGMPSLSWILAFTLSMVSEDSTSRVMVLPVRVLTNICIPPRSLRTRWSVDSFWML*

>peptide 8 (53 aa)
MPSLSWILAFTLSMVSEDSTSKVMVLPVRVLTKICIPPRSLSTRWSVDSFWML*

Sequence

>CNT30193041
AAGCAGCTCCACCGCCAGGAGCTTACTGTCCACCACGCAGACGGAGCACCAAGTGAAGGGTGGAATCCTTCTGGATGTTGTAGTCCGCCAAGGTGCGGCC
ATCCTCGAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCTGAG
GACTCAACCTCCAAGGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCATACCACCACGGAGCCTGAGCACCAGGTGGAGTGTGGACTCCTTCT
GGATGTTGTAGTCGGCCAGGGTGCGGCCATCCTCAAGCTGCTTACCGGCAAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTT
GGCCTTCACATTGTCAATGGTGTCCGAGGACTCAACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACAAATATCTGCATACCACCACGGAGCCTG
AGGACCAGGTGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTACGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCG
GAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGATGACTCCACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTCAC
AAAGATTTGCATGCCACCACGGAGCCTGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCAAGTGTGCGGCCATCCTCAAGCTGCTTG
CCAGCAAAGATGAGACGCTGCTGGTCCGGTGGGATACCCTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCGATGGTGTCAGATGACTCCACCTCAAGGG
TGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATCTGTAAATATGAAGATAGAACCAGAGTAAGTTATGGTACAGGGATATCTGCAGTACAGTA
AACAATAGATGAACCAGATGGCCACCATGCTACAAAGATGAAATTGCAACAGAGATGAAATCAGCTGTAGAGCAACCTGCCCAGGAGCTGCCCCGCTACA
AAGCTACTCCCTCCGTCCCATAATGTAAGACGTTTTTTTTTACACTAGTGTAGTGTACAAAAACGTTTACATTATGGGACGGAGGGAGTATCTACCAGCA
CAATCTTTAGCTTCAGTGCGAGTAATATCGGCAAACCGACATGAATTTAAGAGTTGAATCGATACCCAACTGCAGATACTACAAGCAACCACAAAGCCAA
ACTAAGGCCAATATTACAAGATCAGCAACTAGCTAACTGTAACTAGATAGATCAACCGAACCAATAGCAACTGCATCCCAATAACAACACGAAGGTGTGT
CCTTCCACAGATTAGGCATAGGTGTATCATGACTCAAGAGCGGTACAAAATCATAAATCCACAGTATCAAACCGAACCAACCAACTACAGCTAGATAAAG
ACGAACCGGCCGCTTAGCAATCCCATCATAATCGGCAGATCTACTCGAAAATCATGGCATAATCAAGAGAGATGGCATTAACTACAATCGGGCCTAATCA
ACCACGACTAACCGAACGGGCTGCGATCGATCAACAGCAATAAGGCCTCGACCCACAGATCTACTCCAAATCCATACGACTAACAGGAATCGAGGGGAGC
CAACAATAACCGATCAAGGCAGACCTGCTCCTAGGAACAATCCCATAGGAACAATCCCAGGGCGCGCATATGACGGGAGGAGGGTGGAGAAACCGGAGGC
TCGCATACCTTGAGGAGGAGGACGAGAGAGCCTTGGCTTCGCTTCGATCGGAGGAGATTTCTCGGCGAGATCGGAGGGGGGCTGGATTGGATCGGATGTG
TGGAGAACAGACGGGAGGGGGCGGGGATT