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Detailed information on CNT30192963


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ASR1|EF2_ARATH, E-value = 8e-109

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693909Secale cerealeOryza sativa24.349.1883.85130forward
CNT30640134Secale cerealeNymphaea colorata42.733.1483.33228forward
CNT30547471Secale cerealeIpomoea triloba43.2642.782.25231forward
CNT30512774Secale cerealeJuglans regia49.0620.9984.35262forward
CNT30372970Secale cerealeArabidopsis thaliana31.2733.8785.03167forward
CNT3071371Secale cerealeQuercus suber44.7683.2885.77239forward
CNT30405832Secale cerealeBeta vulgaris46.4430.9283.87248forward
CNT30636551Secale cerealeCapsicum annuum44.9436.3684.17240forward
CNT30224330Secale cerealeHordeum vulgare49.2554.4597.34263forward
CNT30543621Secale cerealeBrassica napus28.8460.1686.36154forward
CNT30510528Secale cerealeSolanum lycopersicum47.7519.884.71255forward
CNT30143750Secale cerealeMedicago truncatula41.228.7282.27220forward
CNT30441049Secale cerealeAegilops tauschii37.2752.6596.48199forward
CNT30665536Secale cerealeTriticum dicoccoides49.2539.9195.82263forward
CNT30309889Secale cerealeCamelina sativa46.4425.2582.66248forward
CNT30263621Secale cerealeBrassica rapa47.3821.3986.56253forward
CNT30445994Secale cerealeSaccharum spontaneum48.6918.2688.85260forward
CNT301916Secale cerealeZea mays48.6963.8888.85260forward
CNT30212259Secale cerealeHelianthus annuus40.4532.3881.02216forward
CNT30716253Secale cerealeMalus domestica golden49.0619.7686.26262forward
CNT30361348Secale cerealeSorghum bicolor48.6949.4388.46260forward
CNT30705326Secale cerealePrunus avium48.3120.0884.11258forward
CNT3054398Secale cerealeAmborella trichopoda21.1616.4784.96113forward
CNT3024028Secale cerealePopulus trichocarpa48.6935.1885.77260forward
CNT30119815Secale cerealeCitrus clementina17.7920.790.5395forward
CNT30557952Secale cerealePanicum hallii48.6931.989.23260forward

Expression of CNT30192963

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MQTSRECNSPLFRVHLDITKEHIFICCHDDIGIFDNTGESL

>peptide 2 (33 aa)
GSQFLIAFAYISSRGPSYKFSTRYLCAFEGEGR*

>peptide 3 (91 aa)
MQVAVPVFLEVHFFVAGSKKFSPHSLSIIFDSSTPNLEAYILAKFVRVKAHPCRPAENATVPFSGYTWTSPRSTSSYVAMMTLAFSITREKV

Sequence

>CNT30192963
TGGGTCACAGTTTCTAATAGCATTTGCATATATATCATCAAGGGGGCCCTCATATAAGTTCTCCACACGGTACCTCTGTGCCTTTGAAGGGGAGGGGAGG
TGAAATATCATCATCTCAAGCAGAGCACGACTGGCGGGCAGCCAAGTTTGCATCACACGCTTCATGAGAGCCTTGCCCATCAAGTCCTTCTCGTCATTCT
TCATGGTCACACCAAGCTTCTTCAACATAGGCCACAACTTATCCTTCTGATCATTCATGCAGGTAGCTGTCCCAGTGTTCTTGGAGGTCCATTTCTTTGT
AGCTGGGTCAAAGAAGTTCTCACCCCACAGCCTCTCCATCATCTTTGACTCATCAACTCCAAATTTGGAGGCATACATCTTAGCAAAGTTTGTAAGGGTG
AAAGCCCACCCATGCAGACCAGCAGAGAATGCAACAGTCCCCTTTTCAGGGTACACTTGGACATCACCAAGGAGCACATCTTCATATGTTGCCATGATGA
CATTGGCATTTTCGATAACACGGGAGAAAGTCTG