Detailed information on CNT30192776


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 1e-100

BLAST vs NONCODE:
NONMEST001181, E-value = 3e-92

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30397839Secale cerealeTriticum turgidum71.5852.0990.22685forward
CNT30441445Secale cerealeAegilops tauschii49.3263.4491.95472forward
CNT30138140Secale cerealeLolium perenne49.4362.6593.45473forward
CNT3067610Secale cerealeLeersia perrieri48.6926.1992.27466forward
CNT30689164Secale cerealeTriticum urartu71.1686.8691.19681forward
CNT30576670Secale cerealeOryza barthii48.855.7992.51467forward

Expression of CNT30192776

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MVLPVRVFTKICMPPRSLSTRWRVDSFWML*

>peptide 2 (98 aa)
MVKYDIKITKGNCADFATAPRNNNLKNHRRFTPFASPRRHQCSPIQTIIPPEHTSVPGQLISCRHNSGLTYKFTKAASQHFSFQIQPNITMHHSMVET*

>peptide 3 (33 aa)
YIVYKEIWRIHICIRRTNRAKLHRLQFLLLMSY*

>peptide 4 (29 aa)
TSSTKKSGGSTYASVGQTEQNCIVFNFYY*

>peptide 5 (30 aa)
MQSDSNHYPTGAHISTRATNQLQTQFRAHL*

Sequence

>CNT30192776
TACATCGTCTACAAAGAAATCTGGAGGATCCACATATGCATCCGTAGGACAAACAGAGCAAAATTGCATCGTCTTCAATTTTTATTATTAATGAGCTATT
AGCTTCATAGGACAATGGTTAAATACGACATCAAAATTACAAAAGGGAATTGTGCGGATTTCGCAACTGCACCAAGGAATAATAACCTCAAAAATCACCG
TCGATTTACCCCCTTTGCATCACCTCGACGACATCAATGCAGTCCGATTCAAACCATTATCCCACCGGAGCACACATCAGTACCAGGGCAACTAATCAGC
TGCAGACACAATTCAGGGCTCACTTATAAGTTCACCAAAGCTGCTTCACAACACTTTAGTTTTCAGATACAACCAAACATAACGATGCATCACAGTATGG
TAGAAACATAGAAACGACCAGGACGACAGACACAGACACCATTGGAGGACATAAGACCTGTGAACCCGCATAAGCCACTCCACTGCCAGGCACTTACTGG
CCACCACGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATGA
GGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATCTTCGCCTTCACGTTGTCAATTGTGTCCGAGGACTCAACCTCCAGGGTGATGGTCTTGCC
GGTGAGGGTCTTCACGAAAATCTGCATGCCACCACGGAGCCTGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGGCCA
TCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGAATCTTAGCCTTGACGTTGTCAATGGTGTCCGAGG
ACTCGACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCATCT