Detailed information on CNT30192668


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 4e-172

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30476145Secale cerealeSaccharum spontaneum80.375.6787.73905forward

Expression of CNT30192668

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MPSLSWIFAFTLSMVSDDSTSKVIVLPVRVLTKICMPPRRRRTRWRVDSFWML*

>peptide 2 (35 aa)
SRHNSGITYLPWLSKAVAQQQKFEIQPSIQCITVP*

>peptide 3 (38 aa)
MRRCWSGGMPSLSWILALTLSMVSEDSTSRVIVLPVRVF

>peptide 4 (61 aa)
MRRCWSGGMPSLSWILALTLSIVSEDSTSNVMVFPVRVFTKICMPPRSLSTRWRVDSFWML*

>peptide 5 (61 aa)
MRRCWSGGMPSLSWILALTLSIVSEDSTSNVMVFPVRVFTKICMPPRSLSTRCSVDSFWML*

Sequence

>CNT30192668
CAGCAGACACAATTCAGGGATCACTTATTTACCATGGCTCAGCAAAGCTGTAGCACAGCAGCAGAAGTTTGAGATACAACCGAGCATACAATGCATCACA
GTACCATAGAAACATAAGACACTACCAAGATGAAAGACACAAACGAGACACCACCAGTAGGACACCGAAGACACAAGACTTGGGAACCCTAGAGACAGAA
GCAGCTCCAGGGCCAGGCACTTTACTGGCCACCACGGAGACGAAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCCGCCAGGGTGCGGCCA
TCCTCAAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCAATGGTGTCAGATG
ACTCCACCTCCAAGGTGATTGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCATGCCACCACGGAGGCGGAGGACAAGGTGGAGGGTGGACTCCTTCTG
GATGTTGTAGTCCGCCAGGGTGCGACCGTCCTCCAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCTGGGGGGATGCCCTCCTTATCCTGGATCTTG
GCCTTGACGTTGTCGATCGTGTCCGAGGACTCAACCTCCAATGTGATGGTCTTTCCGGTGAGGGTCTTCACGAAGATCTGCATGCCACCCCGGAGCCTGA
GCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGGGTGCGACCGTCCTCCAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCTGG
GGGGATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCAACCTCCAATGTGATGGTCTTTCCGGTGAGGGTCTTCACG
AAGATCTGCATGCCACCCCGGAGCCTGAGCACCAGGTGTAGTGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCATCCTCAAGCTGCTTGC
CAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGT
GATTGTCTTGCCAGTGAGGGTCTTCAC