Detailed information on CNT30192628


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CG84|UBI4P_NICSY, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 8e-177

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30242826Secale cerealeAvena sativa74.7673.4492.37918forward
CNT30583253Secale cerealeEchinochloa crusgalli56.1932.5691.74690forward

Expression of CNT30192628

Peptides detected in this lncRNA

>peptide 1 (35 aa)
SRHNSGITYLPWLSKAVAQQQKFEIQPSIQCITVP*

>peptide 2 (61 aa)
MRRCWSGGMPSLSWILALTLSIVSEDSTSNVMVFPVRVFTKICMPPRSLSTRWRVDSFWML*

>peptide 3 (53 aa)
MPSLSWIFAFTLSMVSDDSTSKVIVLPVRVLTKICMPPRRRRTRWRVDSFWML*

>peptide 4 (61 aa)
MRRCWSGGMPSLSWILALTLSIVSEDSTSNVMVFPVRVFTKICMPPRSLSTRWRVDSFWML*

>peptide 5 (61 aa)
MRRCWSGGMPSLSWILAFTLSMVSEDSTSRVMVLPVRVLTKICMPPRSLSTRWRVDSFWML*

Sequence

>CNT30192628
AGCAGACACAATTCAGGGATCACTTATTTACCATGGCTCAGCAAAGCTGTAGCACAGCAGCAGAAGTTTGAGATACAACCGAGCATACAATGCATCACAG
TACCATAGAAACATAAGACACTACCAAGATGAAAGACACAAACGAGACACCACCAGTAGGACACCGAAGACACAAGACTTGGGAACCCTAGAGACAGAAG
CAGCTCCAGGGCCAGGCACTTTACTGGCCACCACGGAGACGAAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCCGCCAGGGTGCGGCCAT
CCTCAAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCAATGGTGTCAGATGA
CTCCACCTCCAAGGTGATTGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCATGCCACCACGGAGGCGGAGGACAAGGTGGAGGGTGGACTCCTTCTGG
ATGTTGTAGTCCGCCAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGG
CCTTGACGTTGTCGATCGTGTCCGAGGACTCAACCTCCAATGTGATGGTCTTTCCGGTGAGGGTCTTCACGAAGATCTGCATGCCACCCCGGAGCCTGAG
CACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCTAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGG
GGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTATCAATGGTGTCTGAGGATTCGACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTAACAA
AGATCTGCATGCCACCGCGGAGCCTGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGGGTGCGACCGTCCTCCAGCTGCTTGCC
AGCAAAGATGAGGCGCTGCTGGTCTGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCAACCTCCAATGTG
ATGGTCTTTCCGGTGAGGGTCTTCACGAAGATCTGCATGCCACCCCGGAGCCTGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCA
GGGTGCGGCCATCCTCCAGCTGCTTGCC