CANTATAdb - search

Detailed information on CNT30192533

BLAST search results

BLAST vs Swiss-Prot:
sp|P53415|CHS2_SECCE, E-value = 8e-147

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30281985	Secale cereale	Chenopodium quinoa	32.19	9.01	80	215	forward
CNT30628476	Secale cereale	Vigna unguiculata	26.5	23.44	82.49	177	forward
CNT3096085	Secale cereale	Solanum tuberosum	15.27	21.43	82.35	102	forward
CNT30564019	Secale cereale	Actinidia chinensis	26.35	23.75	81.82	176	forward
CNT3088050	Secale cereale	Vigna radiata	40.42	53.78	81.11	270	forward
CNT30252036	Secale cereale	Avena sativa	32.78	13.7	81.28	219	forward
CNT3074040	Secale cereale	Brassica juncea	19.46	29.41	85.38	130	forward
CNT30610101	Secale cereale	Gossypium raimondii	26.8	6.87	84.36	179	forward
CNT30365392	Secale cereale	Sorghum bicolor	50	57.59	85.03	334	forward
CNT30103826	Secale cereale	Oryza rufipogon	30.54	29.52	84.31	204	forward
CNT30593102	Secale cereale	Eragrostis curvula	23.95	73.73	85.62	160	forward
CNT30114121	Secale cereale	Ficus carica	39.37	16.27	80.23	263	forward

Expression of CNT30192533

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MSTPEVVQKTRWVILDRGCPHSLIAFCAAAFPSLGTSTTTMSCRASRDGAM*

>peptide 2 (77 aa)
GLKASSRARSMFLEMSPGTSLRRWKVRPTSRRWPSMAPSESGRIVWLADTSWNRGRSTDSSGSAPTITAAAPSPKSA*

Sequence

>CNT30192533
GGCTTGAAAGCGTCCTCTAGGGCACGCTCGATGTTCTTGGAGATGAGCCCGGGCACATCCTTGAGGAGGTGGAAGGTGAGGCCGACCTCTCGGAGGTGGC
CGTCGATGGCGCCCTCTGAGTCCGGAAGAATCGTCTGGCTCGCAGACACCAGTTGGAATAGGGGACGCTCAACGGACTCGTCAGGGTCTGCACCGACGAT
CACCGCGGCCGCACCATCGCCAAAGAGCGCTTGACCAACCAGCGAGTCGAGGTGGGACTCGTGCGGGCCGCGGAAGGTCACCGCGGTGATCTCGGAGCAG
ACCACCAGCACGCGCGCGCCGCGGTTGTTCTCAGCAAGGTCTTTGGCTAGGCGAAGCACCGTCCCGCCGGCGAAGCAACCCTGCTGATACATCATGAGGC
GCTTCACGGACGGGCGAAGGCCGAGCATTTTGGTCAGCTGGTAGTCAGCGCCCGGCATGTCCACCCCGGAGGTGGTGCAGAAGACAAGGTGGGTGATCTT
AGACCGGGGCTGCCCCCACTCCTTGATCGCCTTCTGTGCCGCCGCCTTCCCGAGTTTGGGAACCTCCACGACCACAATGTCCTGCCGTGCGTCCAGAGAC
GGTGCCATGTAGGCGCACATGTTGGGGTTGTCCTGTAAGATCTCCTCCGTTAGGTGCATGTACCTCTT