Detailed information on CNT30192407


BLAST search results

BLAST vs Swiss-Prot:
sp|P53415|CHS2_SECCE, E-value = 8e-147

BLAST vs NONCODE:
NONPOPT000627, E-value = 3e-27

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30378024Secale cerealeArabidopsis thaliana20.0624.3281.34134forward
CNT3045136Secale cerealePrunus dulcis29.0431.1979.9194forward
CNT30466546Secale cerealeSaccharum spontaneum39.2298.588.17262forward
CNT30680228Secale cerealeTriticum urartu66.1793.6492.08442forward
CNT30355776Secale cerealeLactuca sativa34.8840.1780.69233forward
CNT30155426Secale cerealePrunus persica32.1972.8879.53215forward
CNT30705527Secale cerealePrunus avium29.0441.978.87194forward
CNT3022855Secale cerealePopulus trichocarpa21.1120.3580.14141forward
CNT30114123Secale cerealeFicus carica55.9923.2778.61374forward

Expression of CNT30192407

Peptides detected in this lncRNA

>peptide 1 (77 aa)
GLKASSRARSMFLEMSPGTSLRRWKVRPTSRRWPSMAPSESGRIVWLADTSWNRGRSTDSSGSAPTITAAAPSPKSA*

>peptide 2 (51 aa)
MSTPEVVQKTRWVILDRGCPHSLIAFCAAAFPSLGTSTTTMSCRASRDGAM*

Sequence

>CNT30192407
GGCTTGAAAGCGTCCTCTAGGGCACGCTCGATGTTCTTGGAGATGAGCCCGGGCACATCCTTGAGGAGGTGGAAGGTGAGGCCGACCTCTCGGAGGTGGC
CGTCGATGGCGCCCTCTGAGTCCGGAAGAATCGTCTGGCTCGCAGACACCAGTTGGAATAGGGGACGCTCAACGGACTCGTCAGGGTCTGCACCGACGAT
CACCGCGGCCGCACCATCGCCAAAGAGCGCTTGACCAACCAGCGAGTCGAGGTGGGACTCGTGCGGGCCGCGGAAGGTCACCGCGGTGATCTCCGAGCAG
ACCACCAGCACGCGTGCGCCGCGGTTGTTCTCAGCGAGGTCTTTGGCTAGGCGAAGCACCGTCCCGCCGGCGAAGCAACCCTGCTGATACATCATGAGGC
GCTTCACGGACGGGCGAAGGCCGAGCATTTTGGTCAGCTGGTAGTCAGCGCCCGGCATGTCCACCCCGGAGGTGGTGCAGAAGACAAGGTGGGTGATCTT
AGACCGGGGCTGCCCCCACTCCTTGATCGCCTTCTGTGCCGCCGCCTTCCCGAGTTTGGGAACCTCCACGACCACAATGTCCTGCCGTGCGTCCAGAGAC
GGTGCCATGTAGGCGCACATGTTGGGGTTGTCCTGTAAGATCTCCTCCGTTAGGTGCATGTACCTCTT