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Detailed information on CNT30191836


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 4e-170

BLAST vs NONCODE:
NONMEST001181, E-value = 3e-129

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30142093Secale cerealeLolium perenne67.6170.0893.43670forward

Expression of CNT30191836

Peptides detected in this lncRNA

>peptide 1 (35 aa)
SRHNSGITYLPWLSKAVAQQQKFEIQPSIQCITVP*

>peptide 2 (53 aa)
MPSLSWIFAFTLSMVSDDSTSKVIVLPVRVLTKICMPPRRRRTRWRVDSFWML*

>peptide 3 (69 aa)
MRRCWSGGMPSLSWILALTLSMVSEDSTSRVIVLPVRMRRCWSGGMPSLSWILALTLSMVSEDSTSRVIV

>peptide 4 (61 aa)
MRRCWSGGMPSLSWILAFTLSMVSEDSTSRVMVLPVRVLTKICMPPRSLSTRCSVDSFWML*

Sequence

>CNT30191836
CAGCAGACACAATTCAGGGATCACTTATTTACCATGGCTCAGCAAAGCTGTAGCACAGCAGCAGAAGTTTGAGATACAACCGAGCATACAATGCATCACA
GTACCATAGAAACATAAGACACTACCAAGATGAAAGACACAAACGAGACACCACCAGTAGGACACCGAAGACACAAGACTTGGGAACCCTAGAGACAGAA
GCAGCTCCAGGGCCAGGCACTTTACTGGCCACCACGGAGACGAAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCCGCCAGGGTGCGGCCA
TCCTCAAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCAATGGTGTCAGATG
ACTCCACCTCCAAGGTGATTGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCATGCCACCACGGAGGCGGAGGACAAGGTGGAGGGTGGACTCCTTCTG
GATGTTGTAGTCCGCTAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTG
GCCTTCACGTTATCAATGGTGTCTGAGGATTCGACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTAACAAAGATCTGCATGCCACCGCGGAGCCTGA
GCACCAGGTGTAGTGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGG
AGGGATGCCCTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATTGTCTTGCCAGTGAGGATGAGACGC
TGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATTGTCT