Detailed information on CNT30191816


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH05|UBI2P_PETCR, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 1e-173

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30226205Secale cerealeHordeum vulgare48.78100.6890.471039forward
CNT30704857Secale cerealePrunus avium53.1571.6985.421132forward

Expression of CNT30191816

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MPSLSWILALTLSMVSDDSTSRVMVLPVRVFTKICMPPRSLSTKWRVDSFWML*

>peptide 2 (52 aa)
MTGGGWRNRRLAYLEEEDERALASLRSEEISRRDRRGAGLDRMCGEQTGGGGD

>peptide 3 (31 aa)
MNLRVESIPNCRYYKQPQSQTKANITRSATS*

>peptide 4 (53 aa)
MPSLFWILAFTLSMVSEDSTSRVMVLPVRVLTKICIPPRSLSTRWSVDSFWML*

>peptide 5 (81 aa)
GAPSEGWTPSGCCSPPRCGHPQAAYPQRSGAAGPGTGGMPSLFWILAFTLSMVSEDSTSRVMVLPVRVFTKICIPPRSLST*

>peptide 6 (61 aa)
MRRCWSGGMPSLSWILAFTLSMVSEDSTSRVMVLPVRVLTNICIPPRSLRTRWSVDSFWML*

>peptide 7 (60 aa)
EHQVKGGLLLDVVVRQGAAILKLLTRKDQAPLVRGPGGCPPCSGSWPSHCQWCPRTQPPG*

>peptide 8 (57 aa)
MESGLLLDVVVCKGAAILKLLTRKDQAPLVRGPGGCPPCSGSWPSHCQWCPRTQHPG*

>peptide 9 (63 aa)
MRRCWSGGIPSLSWILALTLSMVSDDSTSRVMVLPVRVFTKICICKYEDRTRVSYGTGISAVQ*

Sequence

>CNT30191816
CGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAAGGTGCGGCCATCCTCAAGCTGCTTACCCGCAAAGATCAGGCGCCGCTGGT
CCGGGGACCGGGGGGATGCCCTCCTTGTTCTGGATCTTGGCCTTCACATTGTCAATGGTGTCCGAGGACTCAACCTCCAGGGTGATGGTTTTGCCGGTGA
GGGTCTTCACGAAGATCTGCATACCACCACGGAGCCTTAGCACCTGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCTGCAAGGGTGCGGCCATCCTC
AAGCTGCTTACCCGCAAAGATCAGGCGCCGCTGGTCCGGGGACCGGGGGGATGCCCTCCTTGTTCTGGATCTTGGCCTTCACATTGTCAATGGTGTCCGA
GGACTCAACATCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCATACCACCACGGAGCCTGAGCACCAGGTGGAGTGTGGACTCCTTC
TGGATGTTGTAGTCGGCCAGGGTGCGGCCATCCTCAAGCTGCTTACCGGCAAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCT
TGGCCTTCACATTGTCAATGGTGTCCGAGGACTCAACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACAAATATCTGCATACCACCACGGAGCCT
GAGGACCAGGTGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTACGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCC
GGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGATGACTCCACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTCA
CAAAGATTTGCATGCCACCACGGAGCCTGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCAAGTGTGCGGCCATCCTCAAGCTGCTT
GCCAGCAAAGATGAGACGCTGCTGGTCCGGTGGGATACCCTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCGATGGTGTCAGATGACTCCACCTCAAGG
GTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATCTGTAAATATGAAGATAGAACCAGAGTAAGTTATGGTACAGGGATATCTGCAGTACAGT
AAACAATAGATGAACCAGATGGCCACCATGCTACAAAGATGAAATTGCAACAGAGATGAAATCAGCTGTAGAGCAACCTGCCCAGGAGCTGCCCCGCTAC
AAAGCTACTCCCTCCGTCCCATAATGTAAGACGTTTTTTTTTACACTAGTGTAGTGTACAAAAACGTTTACATTATGGGACGGAGGGAGTATCTACCAGC
ACAATCTTTAGCTTCAGTGCGAGTAATATCGGCAAACCGACATGAATTTAAGAGTTGAATCGATACCCAACTGCAGATACTACAAGCAACCACAAAGCCA
AACTAAGGCCAATATTACAAGATCAGCAACTAGCTAACTGTAACTAGATAGATCAACCGAACCAATAGCAACTGCATCCCAATAACAACACGAAGGTGTG
TCCTTCCACAGATTAGGCATAGGTGTATCATGACTCAAGAGCGGTACAAAATCATAAATCCACAGTATCAAACCGAACCAACCAACTACAGCTAGATAAA
GACGAACCGGCCGCTTAGCAATCCCATCATAATCGGCAGATCTACTCGAAAATCATGGCATAATCAAGAGAGATGGCATTAACTACAATCGGGCCTAATC
AACCACGACTAACCGAACGGGCTGCGATCGATCAACAGCAATAAGGCCTCGACCCACAGATCTACTCCAAATCCATACGACTAACAGGAATCGAGGGGAG
CCAACAATAACCGATCAAGGCAGACCTGCTCCTAGGAACAATCCCATAGGAACAATCCCAGGGCGCGCATATGACGGGAGGAGGGTGGAGAAACCGGAGG
CTCGCATACCTTGAGGAGGAGGACGAGAGAGCCTTGGCTTCGCTTCGATCGGAGGAGATTTCTCGGCGAGATCGGAGGGGGGCTGGATTGGATCGGATGT
GTGGAGAACAGACGGGAGGGGGCGGGGATT