Detailed information on CNT301916


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ASR1|EF2_ARATH, E-value = 2e-84

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30640134Zea maysNymphaea colorata61.6736.4880.08251forward
CNT30547410Zea maysIpomoea triloba41.0331.4581.44167forward
CNT30512774Zea maysJuglans regia98.2832.0581400forward
CNT3071371Zea maysQuercus suber59.4684.3285.12242forward
CNT30405832Zea maysBeta vulgaris58.9729.9385240forward
CNT30636551Zea maysCapsicum annuum55.5334.2482.74226forward
CNT30192963Zea maysSecale cereale63.8848.6988.85260forward
CNT30224139Zea maysHordeum vulgare32.9244.0889.55134forward
CNT30543621Zea maysBrassica napus35.8757.0386.3146forward
CNT30510528Zea maysSolanum lycopersicum95.5830.282.52389forward
CNT30143750Zea maysMedicago truncatula27.0314.3685.45110forward
CNT30441049Zea maysAegilops tauschii27.5229.6391.96112forward
CNT30309636Zea maysCamelina sativa89.6831.5283.84365forward
CNT30263621Zea maysBrassica rapa89.6830.8586.58365forward
CNT30612508Zea maysArabis alpina96.3115.4584.18392forward
CNT30445994Zea maysSaccharum spontaneum10028.5896.56407forward
CNT30212259Zea maysHelianthus annuus49.1429.9980200forward
CNT30716253Zea maysMalus domestica golden95.3329.2683.51388forward
CNT30361348Zea maysSorghum bicolor97.0575.195.44395forward
CNT30706279Zea maysPrunus avium80.8454.282.67329forward
CNT3054398Zea maysAmborella trichopoda26.2915.688.79107forward
CNT30119815Zea maysCitrus clementina24.5721.7991100forward
CNT30557952Zea maysPanicum hallii99.5149.6993.83405forward

Expression of CNT301916

Peptides detected in this lncRNA

>peptide 1 (91 aa)
QVGEPVFLVVHFFVAGSKKFSPHSLSIILVSSTPNLDAYIFAKLVRVKAHPCRPAEKATVPFSGYTWTSPRSLSSYVAMMTLAFSMTREKV*

Sequence

>CNT301916
CAGGTAGGAGAACCTGTGTTCTTGGTGGTCCACTTCTTTGTGGCAGGGTCAAAGAAGTTCTCACCCCATAGCCTCTCCATCATCTTAGTTTCATCAACTC
CAAACTTAGATGCATACATCTTTGCGAAGTTAGTGAGGGTGAAGGCCCATCCGTGCAGACCAGCAGAAAAAGCAACTGTCCCCTTCTCTGGGTATACTTG
GACATCACCAAGGAGCTTATCTTCATATGTTGCCATGATGACATTGGCATTCTCAATGACACGGGAGAAAGTCTGATACGCTTCCTCACCCTCAACCTGA
AGCTCAAGGAAGCACCTGTCCATCTTGTTCACCGTGAGAACTGGCCTAATCCTCTCACCAAGGGCTTGGCGAAGCACAGTTTCAGTTTGCACACAGACAC
CTTCAAT