Detailed information on CNT30191442


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 8e-168

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30400381Secale cerealeTriticum turgidum51.448591.03680forward
CNT30553681Secale cerealeOryza glaberrima66.0480.6886.83873forward

Expression of CNT30191442

Peptides detected in this lncRNA

>peptide 1 (28 aa)
MRRCWSGGMPSLSWILALTLSMVSEDSTS

>peptide 2 (30 aa)
MQSDSNHYPTGAHISTRATNQLQTQFRAHL*

>peptide 3 (61 aa)
MRRCWSGGMPSLSWIFAFTLSMVSDDSTSKVIVLPVRVLTKICMPPRRRRTRWRVDSFWML*

>peptide 4 (98 aa)
MVKYDIKITKGNCADFATAPRNNNLKNHRRFTPFASPRRHQCSPIQTIIPPEHTSVPGQLISCRHNSGLTYKFTKAASQHFSFQIQPNITMHHSMVET*

>peptide 5 (61 aa)
MRRCWSGGMPSLSWILAFTLSMVSEDSTSRVMVLPVRVLTKICMPPRSLSTRCSVDSFWML*

>peptide 6 (61 aa)
MRRCWSGGMPSLSWILALTLSIVSEDSTSNVMVFPVRVFTKICMPPRSLSTRWRVDSFWML*

Sequence

>CNT30191442
GGACAAACAGAGCAAAATTGCATCGTCTTCAATTTTTATTATTAATGAGCTATTAGCTTCATAGGACAATGGTTAAATACGACATCAAAATTACAAAAGG
GAATTGTGCGGATTTCGCAACTGCACCAAGGAATAATAACCTCAAAAATCACCGTCGATTTACCCCCTTTGCATCACCTCGACGACATCAATGCAGTCCG
ATTCAAACCATTATCCCACCGGAGCACACATCAGTACCAGGGCAACTAATCAGCTGCAGACACAATTCAGGGCTCACTTATAAGTTCACCAAAGCTGCTT
CACAACACTTTAGTTTTCAGATACAACCAAACATAACGATGCATCACAGTATGGTAGAAACATAGAAACGACCAGGACGACAGACACAGACACCATTGGA
GGACATAAGACCTGTGAACCCGCATAAGCCACTCCACTGCCAGGCACTTACTGGCCACCACGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGA
TGTTGTAGTCCGCCAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCGC
CTTCACGTTGTCAATGGTGTCAGATGACTCCACCTCCAAGGTGATTGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCATGCCACCACGGAGGCGGAGG
ACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGGG
GAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCAACCTCCAATGTGATGGTCTTTCCGGTGAGGGTCTTCACGAA
GATCTGCATGCCACCCCGGAGCCTGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGGGTGCGACCGTCCTCCAGCTGCTTGCCA
GCAAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTATCAATGGTGTCTGAGGACTCGACCTCCAGGGTGA
TGGTCTTGCCGGTGAGGGTCTTAACAAAGATCTGCATGCCACCGCGGAGCCTGAGCACCAGGTGTAGTGTGGACTCCTTCTGGATGTTGTAGTCAGCCAG
GGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCGATG
GTGTCCGAGGACTCGACCTCGA