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Detailed information on CNT30191304


BLAST search results

BLAST vs Swiss-Prot:
sp|O23755|EF2_BETVU, E-value = 0.0

BLAST vs NONCODE:
NONGMAT000778, E-value = 1e-58

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674834Secale cerealeSetaria viridis28.5257.8892.18371forward
CNT30532226Secale cerealeEucalyptus grandis26.2147.1686.22341forward
CNT30316236Secale cerealeCorylus avellana18.9953.8185.83247forward
CNT30547574Secale cerealeIpomoea triloba18.668.1786.36242forward
CNT30512729Secale cerealeJuglans regia61.9578.3381.76806forward
CNT30372986Secale cerealeArabidopsis thaliana31.7440.4183.05413forward
CNT30379936Secale cerealeManihot esculenta19.3775.4585.71252forward
CNT30405823Secale cerealeBeta vulgaris18.2252.6784.39237forward
CNT30488117Secale cerealeOlea europaea19.7552.6685.6257forward
CNT30711584Secale cerealeGlycine max26.949.7285.43350forward
CNT3045373Secale cerealePrunus dulcis29.4448.8583.55383forward
CNT30300473Secale cerealeTriticum aestivum55.9675.2196.29728forward
CNT30224354Secale cerealeHordeum vulgare39.8910096.53519forward
CNT30510505Secale cerealeSolanum lycopersicum35.5942.6386.39463forward
CNT30552635Secale cerealeOryza glaberrima38.8948.7591.3506forward
CNT30441158Secale cerealeAegilops tauschii58.3410096.44759forward
CNT30309793Secale cerealeCamelina sativa29.5249.3684.38384forward
CNT3059659Secale cerealeArabidopsis lyrata16.8350.4683.56219forward
CNT30135610Secale cerealeLolium perenne32.4449.8892.42422forward
CNT3014085Secale cerealeZea mays24.2151.6490.48315forward
CNT30605685Secale cerealeGossypium raimondii34.0557.9884.88443forward
CNT30345702Secale cerealeEragrostis tef42.1267.8286.5548forward
CNT30359537Secale cerealeLactuca sativa25.5250.3882.23332forward
CNT30369654Secale cerealeOryza glumipatula35.4352.3991.76461forward
CNT30153558Secale cerealePrunus persica15.660.0683.25203forward
CNT30107537Secale cerealeOryza longistaminata26.9838.1991.17351forward
CNT30149525Secale cerealeBrachypodium distachyon8.9938.7493.16117forward
CNT30100253Secale cerealeOryza rufipogon45.8954.1791.29597forward
CNT30575986Secale cerealeOryza barthii32.936.2491.59428forward
CNT30497701Secale cerealeDigitaria exilis24.999.6991.98324forward
CNT30116094Secale cerealeOryza nivara38.7457.2791.27504forward
CNT30604019Secale cerealeOryza punctata23.4490.2492.46305forward

Expression of CNT30191304

Peptides detected in this lncRNA

>peptide 1 (74 aa)
MLVGGLAHDSAAGLLQNSLTEGDNRRGNNNFSTTHEVLLQILQTDFKVKLSSSSNDMLTRLLNATENHRVRLRQP

>peptide 2 (40 aa)
MTVRQDFSRTVSRKETTGGETIISAPPMKSSCRSFKQISR*

>peptide 3 (33 aa)
MMSQWSNTHWGKAWPDVAALRVLENPKDSMTGR*

>peptide 4 (97 aa)
MPRMFSSANAPSFDAHWKPATTESLISFRYCTPLHMSTTMLGPVVSGPKHQIFLARSLSHPNSSDRILERTLGSSRGPMRPSSIASANPSSNGRASM*

Sequence

>CNT30191304
GGCTAGAACTCGCAAACATAACAACACGCACGACGCAATTTGCTAGCACAACAATCAAATATACGTAAATGAAACCAAGCACAAAAGCAAACACAGCACA
ATAAAAATAACCACCAGCTGACGACGGATATATCATCTAAGTTTAACATCTGTTACATCACCACGACCGTCATCAAAACCATAGTCTCAGTAGCACCAAC
ATACAAACAACAAGATAGTAAGGAAGACACATAGGGAGAAAAATACCGCGCCTCCCTTCACAGCAAGAGCCAGCAGCAAAACATGACCCCCAAAATTTAG
AGCTTGTCCTCGAAATCGGATAGGGGGGTCATCTGCTCCTTGAGACCCTTCCTCTTGCGGATCTCCGTCACGAGCGTCGCCGACTGGGTGCCGGGGTCCA
GAGGGTCGGAAGCCATGATGTCCCAGTGGTCGAACACGCACTGGGGGAAGGCCTGGCCGGACGTCGCCGCCCTCAGGGTGCTCGAGAACCCGAAGGACTC
GATGACAGGCAGGTAGGCCTTGATGTTGTAGAGTGGGGTACCTTGCCTCTGCATCTCCTCGAACACGTGCCCTCTCTTCTGATTGAGAACACCATAGATA
CCACCAAGTGCGTTCTCCGGGGCCTGGATCTCAACCAGGTACACAGGCTCCAGCAGCCTTGGCTTAGCAGTGAGCTGAGAAGCATAAATGACCCTCCTGG
CTGTTGGGATGACCTGACCACCACCCCTGTGAATAGCATCAGTGTGCAGAACAACATCACAGACCTCAAAGCAGATGCCACGCATGTTCTCCTCAGCCAA
TGCACCTTCCTTTGATGCCCACTGGAAACCAGCCACAACAGAATCCTTGATTTCATTCAGATACTGCACTCCCTTACACATGTCAACAACCATGTTGGGG
CCAGTCGTCTCAGGTCCAAAGCACCAAATCTTCTTGGCAAGATCCTTGTCCCACCCGAACTCCTCAGACAGGATCTTGGAGCGCACCTTAGGATCATCAC
GTGGGCCAATGCGGCCATCATCAATAGCCTCAGCCAATCCCTCCTCCAATGGGCGAGCTTCCATGTAAAGACGGTTATGCTTGTTGGGGGACTTGCTCAT
GACAGTGCGGCAGGACTTCTCCAGAACAGTCTCACGGAAGGAGACAACAGGAGGGGAAACAATAATTTCAGCACCACCCATGAAGTCCTCCTGCAGATCC
TTCAAACAGATTTCAAGGTGAAGCTCTCCAGCTCCAGCAATGATATGCTCACCAGACTCCTCAATGCTACAGAGAACCATAGGGTCAGACTTCGCCAGCC
G