Detailed information on CNT30191096


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CG83|UBIQP_HORVU, E-value = 9e-98

BLAST vs NONCODE:
NONMTRT002042, E-value = 5e-51

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30305143Secale cerealeTriticum aestivum62.6985.9691.33588forward
CNT30398809Secale cerealeTriticum turgidum7150.6590.39666forward
CNT30142113Secale cerealeLolium perenne47.5527.5894.39446forward
CNT30721839Secale cerealeTriticum spelta48.466.3793.61454forward

Expression of CNT30191096

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MVSEDSTSSVMVLPVRVFTKICIPPRRRSTRWRVDSFWML*

>peptide 2 (29 aa)
TSSTKKSGGSTYASVGQTEQNCIVFNFYY*

>peptide 3 (30 aa)
MQSDSNHYPTGAHISTRATNQLQTQFRAHL*

>peptide 4 (98 aa)
MVKYDIKITKGNCADFATAPRNNNLKNHRRFTPFASPRRHQCSPIQTIIPPEHTSVPGQLISCRHNSGLTYKFTKAASQHFSFQIQPNITMHHSMVET*

>peptide 5 (33 aa)
YIVYKEIWRIHICIRRTNRAKLHRLQFLLLMSY*

Sequence

>CNT30191096
TACATCGTCTACAAAGAAATCTGGAGGATCCACATATGCATCCGTAGGACAAACAGAGCAAAATTGCATCGTCTTCAATTTTTATTATTAATGAGCTATT
AGCTTCATAGGACAATGGTTAAATACGACATCAAAATTACAAAAGGGAATTGTGCGGATTTCGCAACTGCACCAAGGAATAATAACCTCAAAAATCACCG
TCGATTTACCCCCTTTGCATCACCTCGACGACATCAATGCAGTCCGATTCAAACCATTATCCCACCGGAGCACACATCAGTACCAGGGCAACTAATCAGC
TGCAGACACAATTCAGGGCTCACTTATAAGTTCACCAAAGCTGCTTCACAACACTTTAGTTTTCAGATACAACCAAACATAACGATGCATCACAGTATGG
TAGAAACATAGAAACGACCAGGACGACAGACACAGACACCATTGGAGGACATAAGACCTGTGAACCCGCATAAGCCACTCCACTGCCAGGCACTTACTGG
CCACCACGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGGGTGCGGCCATCCTCAAGCTGCTTACCAGCGAAGATCA
GGCGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTGACATTGTCGATGGTGTCAGAGGACTCAACCTCCAGCGTGATGGTCTTGCC
AGTGAGGGTCTTTACGAAGATCTGCATACCACCACGGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGGCCA
TCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGAATCTTAGCCTTGACGTTGTCAATGGTGTCCGAGG
ACTCGACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTC