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Detailed information on CNT30191038


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 5e-101

BLAST vs NONCODE:
NONMEST001181, E-value = 1e-73

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691328Secale cerealeOryza sativa51.7462.0892.39460forward
CNT30301530Secale cerealeTriticum aestivum55.9128.1196.98497forward
CNT30225777Secale cerealeHordeum vulgare48.3758.1194.88430forward
CNT30397375Secale cerealeTriticum turgidum55.9128.5695.57497forward
CNT30667831Secale cerealeTriticum dicoccoides55.6864.6295.56495forward
CNT30143305Secale cerealeLolium perenne52.3169.8293.12465forward
CNT30115854Secale cerealeOryza nivara52.4261.892.49466forward

Expression of CNT30191038

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MRRCWSGGMPSLSWILALTLSMVSELSTSRVIVLPVRVFTKICIPPRRRRTRWRVDSFWML*

>peptide 2 (80 aa)
MSDRGTHQSTQGQGHPPEYPGQLLTTAEAEHQVEGGLLLDVVVSEGATILQLLAGKDETLLVRGNALLVLDLGLDVVDGV*

>peptide 3 (43 aa)
MRRCWSGGMPSLSWIFALTLSMVSDDSTSRVMVLPVNVFTKICI

Sequence

>CNT30191038
AGCACCGTTTTAGTATAACATGATACTTAACACAGTAAAACAAAGAACCTATAACACATAGTAGAGTCAGATAACAAATAAACTGGAGCCGAATGGAATG
AAAGCTTAAGTTCAGATAGGAAATTACAAAAGGCCACAAAAGTAAGATCATTTTTTGTCAAATAAAAACTAGAAGAGGCAACCAATTCAACCAGTAGATA
TCAATTCAACAGTAAAATGCGCATAGGCAGATTAGTTCGAAGTTCACTTATTCATACTTGACCGTACTGCTATACCAGCAACTGTTTAAACGAAAACAAC
ACACATCTCACGGGGACAAACACGGTACGACTTGACACAAATCAGACTAACACTTCACATGAGCGACAGGGGCACCCACCAGAGTACCCAGGGACAGGGG
CACCCACCAGAGTACCCAGGGCAATTACTGACCACCGCGGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTGCGA
CCATCCTCCAGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCTG
AGCTCTCAACCTCCAGAGTGATAGTCTTGCCAGTAAGGGTCTTCACAAAGATCTGCATACCGCCACGGAGACGCAGGACAAGGTGGAGGGTGGACTCCTT
CTGGATGTTGTAGTCAGCAAGGGTCCTGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATT
TTTGCCTTAACGTTGTCGATGGTGTCAGACGACTCCACCTCAAGGGTGATGGTCTTGCCTGTCAATGTCTTCACAAAGATCTGCATCTG