CANTATAdb - search

Detailed information on CNT30190954

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT006943, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30616920	Secale cereale	Sesamum indicum	59.18	53.43	88.12	522	forward
CNT30638683	Secale cereale	Capsicum annuum	57.94	99.03	90.8	511	forward
CNT3088853	Secale cereale	Vigna radiata	30.27	65.93	96.25	267	forward
CNT30136065	Secale cereale	Lolium perenne	73.13	100.47	98.45	645	reverse complement
CNT30364730	Secale cereale	Sorghum bicolor	45.24	70.37	98.75	399	forward
CNT30604668	Secale cereale	Oryza punctata	48.87	98.18	96.52	431	reverse complement

Expression of CNT30190954

Peptides detected in this lncRNA

>peptide 1 (75 aa)
RSSFSWEYGISYILQRRSAWYEPRGEAIASPRGSYFSAAALGTRTSARGIFSTPSYPEKAGSPCVLKPITIFRLT*

>peptide 2 (34 aa)
MFSLLKPTFSLPLRQPPLSRLLPSKAERSPTDAF*

>peptide 3 (68 aa)
VRAFPGSMASVTYFSAVAPGMSLVEKQSLVHGAHTSALQRLVLGPRLEAFSLPLLTLKKQGHLVSLNL*

Sequence

>CNT30190954
TCGTTCGAGCTTTTCCTGGGAGTATGGCATCAGTTACATACTTCAGCGCCGTAGCGCCTGGTATGAGCCTCGTGGAGAAGCAATCGCTAGTCCACGGGGC
TCATACTTCAGCGCTGCAGCGCTTGGTACTCGGACCTCGGCTCGAGGCATTTTCTCTACCCCTTCTTACCCTGAAAAAGCAGGGTCACCTTGTGTCCTTA
AACCTATAACCATCTTTCGGCTAACCTAGCCTCCTCCGTCCCTCCGTACCAACAAGGGGTAGTACAGGAATATTGACCTGTTGTCCATCGACTACGCCTT
TCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCGGAGGAAACCTTGGGTTTTCGGGGCATTGGATTCTCACCAATGTTTTCGTTAC
TCAAGCCGACATTCTCGCTTCCGCTTCGTCAACCCCCGCTTTCGCGGTTGCTTCCCTCTAAGGCGGAACGCTCCCCTACCGATGCATTTTGACATCCCAC
AGCTTCGGCAGATCGCTTAGCCCCGTTCATCTTCAGCGCAAGGGCGCTCGATCAGTGAGCTATTACGCACTCTTTAAAGGGTGGCTGCTTCTAGGCAAAC
CTCCTGGCTGTCTTTGCACCCCCACCTCCTTTATCACTGAGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCGACGATGAAGCTT
ATCCCCCATCGTCTCACTGGCCGACCTTGACCCCTGTTATTTTTGGGTCATATCTAGTATTCAGAGTTTGCCTCGATTTGGTACCGCTCGCGCAGCCCGC
ACCGAAACAGTGCTTTACCCCTAGATGTCCAGTCAACTGCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGT