Detailed information on CNT30190923


BLAST search results

BLAST vs Swiss-Prot:
sp|P69326|UBIQ_WHEAT, E-value = 6e-39

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30395877Secale cerealeTriticum turgidum48.3948.596.9226forward
CNT30666465Secale cerealeTriticum dicoccoides47.5449.3396.85222forward

Expression of CNT30190923

Peptides detected in this lncRNA

>peptide 1 (68 aa)
MSRHLLATTQAEHQVEGGLLLDVVVSQGAAILELLASKDEALLVRWDSLLVLDLGLDIIDRVRRLDLKG

>peptide 2 (62 aa)
PGSCEKKTSSMLEFHEYFMTSSIRICRQIKYGTNDTITHDKRFTYSSRFHHPNSKRHHIISL*

>peptide 3 (30 aa)
MRRCWSGGIPSLSWILDLTLSIVSDDSTSRV

>peptide 4 (29 aa)
MGQTIQLHTIKGSLIHHVFIIQTQSDITS*

Sequence

>CNT30190923
CCTGGTTCTTGTGAGAAGAAAACCAGTTCAATGCTAGAATTTCATGAATACTTCATGACCAGTTCAATAAGAATCTGCAGACAAATAAAGTATGGGACAA
ACGATACAATTACACACGATAAAAGGTTCACTTATTCATCACGTTTTCATCATCCAAACTCAAAGCGACATCACATCATAAGTTTATAAACACAACCAAA
CTCCATTGGAGTACATCTAAGACACCAGACCTGTGAACCCAGAGACGGAAGGAGCGCCATGAGCAGGCACTTACTGGCCACCACGCAGGCGGAGCACCAG
GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGTGGGATT
CCCTCCTTGTCCTGGATCTTGGACTTGACATTATCGATCGTGTCAGACGACTCGACCTCAAGGGTGA