Detailed information on CNT30190568


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673415Secale cerealeSetaria viridis1.472110042reverse complement
CNT30292481Secale cerealeTriticum aestivum7.0940.1695.54202reverse complement
CNT30437581Secale cerealeAegilops tauschii8.568093.44244reverse complement
CNT30249088Secale cerealeAvena sativa4.3923.2386.4125reverse complement
CNT30661738Secale cerealeTriticum dicoccoides8.684.7894.29245reverse complement
CNT30135280Secale cerealeLolium perenne2.6726.392.1176reverse complement
CNT30681951Secale cerealeTriticum urartu9.0228.9193.77257reverse complement
CNT30595554Secale cerealeOryza meridionalis2.8431.0388.8981reverse complement
CNT30369283Secale cerealeOryza glumipatula2.8420.8888.8981reverse complement

Expression of CNT30190568

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MYIMGQTWEKNDGHMKKCIITGVLVCETRIESGM*

>peptide 2 (57 aa)
MSIQKRKDVSFPRANHHSHPKDCNQTWFYCLDTSPEDENPLSGYRSHRLSENHPFPQR

>peptide 3 (56 aa)
MLGWVQELRPGWRWRWRTGAAAAPSASAAPAAAAPAAAARSIIDHACTYRARASYL*

>peptide 4 (89 aa)
MGISFSPLAHLLRLPPRARPCSSSAAVVDPCIFLNSGCCINLFGPETCQRASAPVNSAFSLQNGKASQTIYFLQLGPVSGYRRGTAEPG*

>peptide 5 (89 aa)
ALAACHSYSNQQARRIEEAPSQHQPKPPSNPKQPQRCLAAEEAAAAAAPASAATAAAAATCTRRSRPPAPPSSSRPPPPTRRTSLLAFS*

>peptide 6 (57 aa)
MGINRPHPGRFIPSSNIPDIRPCSCQSSTPCKSLALRGFKHFINRHDVIFPNHIEPP*

>peptide 7 (57 aa)
MALVYYQLATFFLEKEECLRPLHLDNACSYFTNYSHKTLQSHTAVRLKPHISLLLSS*

>peptide 8 (59 aa)
MTSSSRITLNHRDVICSCNTCTCFIFYLLKAPKIEATVSSHIHLSSSLIPAHAVSSFVL*

>peptide 9 (74 aa)
MSCCGGSCGCGSSCKCGNGCGGCNMYPEVEAAGATFLVSATATHKAYVPSGLLLVNYMKFPMHHESLDGSQLTL*

>peptide 10 (36 aa)
MRYYIEYKLNTYCDDLLYFLREKFLSIHKSWQYKEQ*

>peptide 11 (34 aa)
MYLFYRCIHVYHGPNLGKKRWTHEEVYNYRGIGL*

>peptide 12 (47 aa)
MHLPRACIISMIDPSIYYHVTLPDQGSLYVYKRLPACMSRAGAMPCM*

>peptide 13 (44 aa)
MIYYIFCGRNFYLFINHGSTKNSRGNKIYNQVCRGFVTADVLAK*

>peptide 14 (40 aa)
MCLCYRPAYGPCLLSTCDVFFRKGGVSPASASGQCMQLLY*

>peptide 15 (39 aa)
MVLTLNLAECPSRRERMLVFLAPITTAILKIVIKPGFIV*

>peptide 16 (36 aa)
MGARAPAGMEMAVENGGCGCTQCKCGTSCGCSCCSC*

>peptide 17 (35 aa)
MLKLCRRRRSLHLPQLRLLHQPVRTRNLPACLRTR*

>peptide 18 (34 aa)
MHRLESVYLYTHVLILQMYSCISWAKPGKKTMDT*

Sequence

>CNT30190568
GCCCTCGCTGCCTGCCATTCTTACTCAAACCAACAAGCAAGAAGAATAGAAGAAGCTCCTAGCCAACACCAACCAAAGCCTCCATCCAATCCCAAGCAAC
CTCAAAGATGTCTTGCTGCGGAGGAAGCTGCGGCTGCGGCAGCTCCTGCAAGTGCGGCAACGGCTGCGGCGGCTGCAACATGTACCCGGAGGTCGAGGCC
GCCGGCGCCACCTTCCTCGTCTCGGCCACCGCCACCCACAAGGCGTACGTCCCTTCTGGCCTTCTCTTAGTTAATTATATGAAGTTCCCCATGCACCATG
AATCACTCGACGGTTCCCAATTAACTTTATAAATGTTGGGATGGGTGCAAGAGCTCCGGCCGGGATGGAGATGGCGGTGGAGAACGGGGGCTGCGGCTGC
ACCCAGTGCAAGTGCGGCACCAGCTGCGGCTGCTCCTGCTGCAGCTGCTAGATCGATAATCGATCATGCATGCACCTACCGCGCGCGTGCATCATATCTA
TGATTGATCCATCGATCTACTACCATGTAACCCTGCCTGATCAGGGGTCTTTGTATGTATATAAGCGCCTGCCTGCCTGCATGAGCAGAGCAGGGGCCAT
GCCATGCATGTAAACCCCTAAATAAAATATCCGGTGGTTTAACCTATACATGTGTTTTTCGACATCAAAGTACCCTAGCCTATAAATGTGTTTGTGTTAT
AGACCAGCTTATGGCCCTTGTTTACTATCAACTTGCGACGTTTTTTTTAGAAAAGGAGGAGTGTCTCCGGCCTCTGCATCTGGACAATGCATGCAGCTAC
TTTACTAATTATTCACACAAGACCTTACAAAGTCATACAGCCGTAAGACTAAAACCACATATATCGCTACTCCTATCCAGTTGATGAAGGGATGCTGATA
GTCTGGGTCTAATACCAGAAAGCGTATGCACCGCTTGGAATCAGTGTATCTTTATACACATGTACTTATTTTACAGATGTATTCATGTATATCATGGGCC
AAACCTGGGAAAAAAACGATGGACACATGAAGAAGTGTATAATTACAGGGGTATTGGTCTGTGAAACGAGAATCGAATCAGGGATGTAAGGGTGTTTCAT
ACGTGTGAATATTACTGGCCGAAGTTGAGTATGAGATACTACATAGAATACAAACTTAACACTTATTGTGATGATTTATTATATTTTTTGCGGGAGAAAT
TTTTATCTATTCATAAATCATGGCAGTACAAAGAACAGTAGAGGTAATAAAATTTACAATCAGGTCTGTCGTGGTTTCGTCACGGCAGATGTCCTAGCAA
AATGACTTAGTCGTGGAGCCATCGCTACGGGTTAGCTTAAAGGGGTTAAAGCGGACAAGGACGCAAGGGGTTTTATACTAGTTCGGCCCCTTCGATGAAG
GTAAAAGCCTACGTCTAGTTTTGTGTGGTATTGCTAGGGTTTCGATGACCAGGGAGCGAATCTGATTTGCCTGTGTCTCGAGTTGTCGTTCTCTCTCCTT
GTACCGTCGCCGGGTCGTCCCTTTATATACACAGGGTGACACCCGGTCCGGTTTACAAAATCCCGAGGCCGGCTCATAAACGTGCCCGGCTCGGTCTCTA
TTTTTCCTATCTTACAACACAAGTTACACGTCGTATGGTGGTTTACACATTACGGGCCCTAACACCTCTTGGGCCTTGGATCTCTAGTCTTCTGTAATAA
AGGGCCATGCTCCATGTCTCACTGGGCTTTAATACGAATAACTCTTTATGGGCATAAACCGGCCCCACCCTGGGCGGTTTATACCTAGTAGCAATATCCC
TGATATTAGGCCCTGTTCATGTCAATCTTCAACGCCTTGTAAAAGTTTGGCCCTCCGCGGCTTCAAACATTTCATAAATCGCCATGACGTCATCTTCCCG
AATCACATTGAACCACCGTGACGTCATCTGCTCATGTAATACTTGTACCTGTTTTATTTTTTACTTATTAAAAGCTCCGAAAATCGAGGCGACAGTATCG
TCCCATATCCACCTTTCTAGCTCCTTGATTCCCGCGCATGCTGTTTCATCTTTCGTCTTATAAATAGGGCAGATGGGCATCTCCTTTTCCCCCCTTGCTC
ATTTGCTTCGTCTTCCTCCTCGCGCTCGTCCATGCTCAAGCTCTGCCGCCGTCGTCGATCCTTGCATCTTCCTCAACTCAGGCTGCTGCATCAACCTGTT
CGGACCAGAAACTTGCCAGCGTGCCTCCGCACCCGTTAACTCCGCTTTTTCCCTTCAAAATGGCAAAGCAAGCCAAACAATTTACTTCCTGCAACTAGGT
CCAGTCTCGGGTTACCGAAGAGGGACTGCAGAACCGGGCTGAGATTGACGCTTTAGGCAAGAAGGATGTCCTCCGTTGAAGAGTTCCTGGACCGGAATGT
CCTCCAGAGCCCAAAGATGGAGATATTATCGTATTTCTTGACCATCTAGCCCGAGGATTCAGTCCTCCAGGATCAAAGATCTTTCGTGACGTGTTGGCTG
ACTTTCAGCTCCATCCTCAAGATATTGGGCCCAATTCTGTGTCCAACATCTGCAATTTTCAAGTATTTTGTGAAGCTTATTTGCAAGAGGAGCCTTCAGT
TGAACTATTCAGGGATTTCTTCCATTTAAACCGTCGCACAGAGTTTACTGATGGTCCTAACACTGAACTTGGCGGAATGTCCATCCAGAAGAGAAAGGAT
GTTAGTTTTCCTCGCGCCAATCACCACAGCCATCCTAAAGATTGTAATCAAACCTGGTTTTATTGTCTAGATACTTCTCCAGAAGATGAAAATCCTCTGT
CAGGTTACCGTTCTCATCGGCTTTCTGAGAACCATCCATTTCCTCAACGG