Detailed information on CNT30190560


BLAST search results

BLAST vs Swiss-Prot:
sp|P04784|CB21_WHEAT, E-value = 2e-175

BLAST vs NONCODE:
NONSTUT001352, E-value = 1e-39

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30722304Secale cerealeTriticum spelta40.1999.2395.37389forward

Expression of CNT30190560

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MAQRQWITSNSRFLEKVSGSAESPAVSQP*

>peptide 2 (77 aa)
LALLLPKILVIYIMVVQPRLHNNTLRGVHNLLDILLAGDKVGCERPCVVADRVSDVVGEVLKWALARDDSLDKEAEH*

>peptide 3 (38 aa)
MPQGLQPSQEGRSCRLGRVGRRSHRVGRRQRGTPRRHP*

>peptide 4 (32 aa)
SCIAFAKNSRNLHHGSTTETAQQYASRRAQSS*

>peptide 5 (57 aa)
MWSARFSSGPLPVTIAWTKKPNIENMARRPFLISFTLSSANASGSSAKPRGSKLPPG*

>peptide 6 (50 aa)
MVTRASPKRAKDGTFFTALPAKVEEERDMVAAAIGKLRKVSAVLYGFSKR*

Sequence

>CNT30190560
TCTTGCATTGCTTTTGCCAAAAATTCTCGTAATTTACATCATGGTAGTACAACCGAGACTGCACAACAATACGCTTCGCGGCGTGCACAATCTTCTTGAC
ATCTTACTTGCCGGGGACAAAGTTGGTTGCGAACGCCCATGCGTTGTTGCTGACAGGGTCAGCGATGTGGTCGGCGAGGTTCTCAAGTGGGCCCTTGCCC
GTGACGATAGCTTGGACAAAGAAGCCGAACATTGAGAACATGGCGAGGCGACCGTTCTTGATCTCCTTCACCTTGAGCTCGGCGAATGCCTCAGGGTCTT
CAGCCAAGCCAAGAGGGTCGAAGCTGCCGCCTGGGTAGAGTGGGTCGACGATCTCACCGAGTGGGCCGCCGGCAACGCGGTACCCCTCGACGGCACCCAT
GAGCACGACCTGGCATGCCCAAATAGCTAGGATGCTTTGCGCGTGCACAAGGCTGGGGTTGCCGAGGTAGTCGAGACCACCCTCACTAAAGATCTGGGAG
CCGGCCTTGAACCAAACAGCCTCGCCGAACTTGACGCCGTTGCGGGCGAGCAACTCAGGGAAGACACAACCAAGTGCACCAAGCATGGCCCAACGACAGT
GGATCACCTCTAACTCCCGGTTCTTGGAGAAGGTCTCAGGGTCAGCTGAAAGTCCGGCAGTGTCCCAACCATAGTCGCCAGGGAACTCACCGGTCAAGTA
GCTCGGGGGCTCACCGGAGAGTGGGCCGAGGTAGAGCACACGGTCAGCGCCGTACCATGGGCTGCCAGAGGAAACCTGCTTCGCCTTCGTTGCGGTCTTG
CGCATGGTGACTCGGGCCTCGCCAAAGAGAGCCAAAGATGGTACATTCTTCACTGCCTTGCCGGCAAAGGTCGAGGAGGAGAGGGACATGGTGGCTGCGG
CCATTGGAAAGCTAAGAAAAGTGTCCGCTGTGTTGTATGGGTTCTCAAAGAGATGAGTGAGTGTGGAG