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Detailed information on CNT30190515


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CG83|UBIQP_HORVU, E-value = 3e-91

BLAST vs NONCODE:
NONMTRT002042, E-value = 8e-62

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690921Secale cerealeOryza sativa53.4627.8493.08448forward
CNT30303356Secale cerealeTriticum aestivum93.5684.9491.07784forward
CNT30225892Secale cerealeHordeum vulgare69.9396.2289.76586forward
CNT30395844Secale cerealeTriticum turgidum73.6339.8890.44617forward
CNT30107350Secale cerealeOryza longistaminata53.4651.9191.74448forward
CNT30550711Secale cerealeOryza brachyantha51.6761.8693.07433forward

Expression of CNT30190515

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MPSLSWILALTLSMVSDDSTSRVMVLPVNV

>peptide 2 (39 aa)
MVIRPDRVDLTRTRNMTNSTRSNVTAITDHHGGGAPGGG*

>peptide 3 (52 aa)
MRRCWSGGMPSLSWILALTLSMVSELSTSRVMVLPVRVFTKICIPPRRRRTR*

Sequence

>CNT30190515
AAATAAGACATACTTTAACGATCTTTTACAGAGGGAGTATTGAATACAGCAGCATAAGATAGAAGATACATGGATAGAACTTGCAAAATCTAGTGATTTT
ACAGGAACATTGGGAGCTACATCCATTATATGTAATCAAAGAGAGCCGCTACGGTAAGAAAGAATACTGCTACTAGTTGCTAATAAAAACTGGAAGCAAA
CATTCAACAAGGAGATATCAAATCGACAGTAAAATCAACAAGCATATTGGTTCAAATTCACTTATTCATACCAAAGCATACCAGCAACTGTTTCACACAT
CATGGGGACTCGATGGTCATCAGACCAGATAGAGTAGACTTAACACGAACAAGAAACATGACTAATAGCACCAGGTCCAACGTCACGGCAATTACTGACC
ACCACGGAGGCGGAGCACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTGCCATCCTCCAGCTGCTTGCCAGCGAAGATGAGA
CGCTGCTGGTCCGGTGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGAGCTCTCAACCTCTAGAGTGATGGTCTTGCCAG
TAAGGGTCTTCACAAAGATCTGCATACCACCACGGAGACGCAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTGCCATC
CTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCAGACGAC
TCCACCTCAAGGGTGATGGTCTTACCTGTCAATGTCTT