Detailed information on CNT30190495


BLAST search results

BLAST vs Swiss-Prot:
sp|P69326|UBIQ_WHEAT, E-value = 1e-46

BLAST vs NONCODE:
NONSTUT000620, E-value = 5e-22

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524139Secale cerealeSetaria italica41.5954.0293.95215forward
CNT30226003Secale cerealeHordeum vulgare83.75101.8889.15433forward
CNT30253692Secale cerealeAvena sativa42.5520.8195.91220forward
CNT30498154Secale cerealeDigitaria exilis41.5942.4193.49215forward

Expression of CNT30190495

Peptides detected in this lncRNA

>peptide 1 (78 aa)
MSRHLLATTQAEHQVEGGLLLDVVVSQGAAVLELLACKDEALLVRRDALLVLDLGLDIVDRVRRLDLKGDGLASEGLHE

>peptide 2 (39 aa)
MRRCWSGGMPSLSWILALTLSIVSDDSTSRVMVLPVRVFT

>peptide 3 (32 aa)
MKHTRAHAENSIGGHRPHQTCEPRDRSSTMTP*

>peptide 4 (31 aa)
TYLSTSNQFNARICRQIATQVWHKPYNYTRY*

>peptide 5 (69 aa)
NIPQYFKPVQCKNLQTNSNTGMAQTIQLHTILRVRLFIMYSSSKLQATSHHKFVDTTKRNRDETHQSTR*

Sequence

>CNT30190495
TAACATACCTCAGTACTTCAAACCAGTTCAATGCAAGAATCTGCAGACAAATAGCAACACAGGTATGGCACAAACCATACAATTACACACGATATTAAGG
GTTCGCTTATTCATCATGTATTCATCATCCAAACTCCAAGCGACATCACATCACAAGTTTGTAGACACAACCAAACGTAACAGAGATGAAACACACCAGA
GCACACGCTGAAAACTCCATTGGAGGACACCGACCGCACCAGACCTGTGAACCCAGAGACAGAAGCAGCACCATGACTCCATGAGCAGGCACTTACTGGC
CACCACGCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCGTCCTCGAGCTGCTTGCCTGCAAAGATGAG
GCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATCGTGTCAGACGACTCGACCTCAAGGGTGATGGTCTTGCCA
GTGAGGGTCTTCACGAA