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Detailed information on CNT30190365


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 9e-147

BLAST vs NONCODE:
NONMEST001181, E-value = 2e-134

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691368Secale cerealeOryza sativa63.4130.9891.27676forward
CNT30519947Secale cerealeSetaria italica61.2674.8988.51653forward
CNT30254194Secale cerealeAvena sativa61.9170.2192.58660forward
CNT30143319Secale cerealeLolium perenne63.3276.6291.7675forward
CNT30595696Secale cerealeOryza meridionalis63.4163.5992.16676forward
CNT30370375Secale cerealeOryza glumipatula62.0169.2988.5661forward
CNT30149632Secale cerealeBrachypodium distachyon62.0168.9391.53661forward
CNT30100520Secale cerealeOryza rufipogon63.4168.1590.98676forward
CNT30603673Secale cerealeOryza punctata63.5168.4590.99677forward

Expression of CNT30190365

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MVSELSTSRVMVFPVRVFTKICIPPRRRRTRWRVDSFWML*

>peptide 2 (29 aa)
MPSLSWILALTLSMVSDDSTSRVMVLPVNV

>peptide 3 (78 aa)
MVIRPDRVDLTRTRNMTNSTRSNVTAITDHHGGGAPGGGWTPSECCSRQGSGHPPAACLQRSGAAGQGGSPPCPGSSP*

>peptide 4 (52 aa)
MRRCWSGGMPSLSWILALTLSMVSELSTSRVMVLPVRVFTKICIPPRRRRTR*

Sequence

>CNT30190365
AAATAAGACATACTTTAACGATCTTTTACAGAGGGAGTATTGAATACAGCAGCATAAGATAGAAGATACATGGATAGAACTTGCAAAATCTAGTGATTTT
ACAGGAACATTGGGAGCTACATCCATTATATGTAATCAAAGAGAGCCGCTACGGTAAGAAAGAATACTGCTACTAGTTGCTAATAAAAACTGGAAGCAAA
CATTCAACAAGGAGATATCAAATCGACAGTAAAATCAACAAGCATATTGGTTCAAATTCACTTATTCATACCAAAGCATACCAGCAACTGTTTCACACAT
CATGGGGACTCGATGGTCATCAGACCAGATAGAGTAGACTTAACACGAACAAGAAACATGACTAATAGCACCAGGTCCAACGTCACGGCAATTACTGACC
ACCACGGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGCAAGGGTCCGGCCATCCTCCAGCTGCTTGCCTGCAAAGATCAGG
CGCTGCTGGTCAGGGGGGATCCCCTCCTTGTCCTGGATCTTCGCCTTGACATTGTCAATGGTGTCAGAACTCTCAACCTCCAGAGTGATGGTCTTCCCGG
TCAGGGTCTTCACAAAGATCTGCATACCACCACGGAGGCGGAGGACAAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTGCCATC
CTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGAGCTC
TCAACCTCTAGAGTGATGGTCTTGCCAGTAAGGGTCTTCACAAAGATCTGCATACCACCACGGAGACGCAGGACAAGGTGAAGGGTGGACTCCTTCTGGA
TGTTGTAGTCAGCAAGGGTCCTGCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGGC
CTTGACATTGTCAATGGTGTCAGACGACTCCACCTCAAGGGTGATGGTCTTACCTGTCAATGTCTT