Detailed information on CNT30189427


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30670676Secale cerealeSetaria viridis18.4126.881.73104forward
CNT30441454Secale cerealeAegilops tauschii98.5876.4196.59557forward
CNT30686679Secale cerealeTriticum urartu76.9910095.63435forward

Expression of CNT30189427

Peptides detected in this lncRNA

>peptide 1 (72 aa)
PFVLIYRCLNPSEKFATDGHVIEAPKVHVANDILRHNKIQKAINRLIHAIIHKKPHPRFKVDSIVLHNRRHH*

>peptide 2 (57 aa)
MVEMGAMDDISGVLVSYSQPKSDKPKELLPWSEYIFITGASTGAAELIAGTNCTLSG*

>peptide 3 (51 aa)
LCPDIQVFESLRKIRHRWACHRSSKGPCCQRHPEAQQNSEGYQSAHPRHHP*

>peptide 4 (29 aa)
MIYLESWCHTPSLSQISQRSCFPGQSTYS*

Sequence

>CNT30189427
CCCTTTGTCCTGATATACAGGTGTTTGAATCCCTCAGAAAAATTCGCCACAGATGGGCATGTCATCGAAGCTCCAAAGGTCCATGTTGCCAACGACATCC
TGAGGCACAACAAAATTCAGAAGGCTATCAATCGGCTCATCCACGCCATCATCCATAAGAAACCTCATCCAAGGTTCAAAGTCGACAGCATTGTTCTCCA
TAACAGGAGGCACCACTGAGTTGTAGGTGTTACTCTGGAGAGGTGCAGATTCTGCTCCTTCAGCAATGGTGGAAATGGGAGCAATGGATGATATATCTGG
AGTCCTGGTGTCATACTCCCAGCCTAAGTCAGATAAGCCAAAGGAGTTGCTTCCCTGGTCAGAGTACATATTCATAACAGGAGCTTCAACAGGGGCAGCA
GAGTTAATTGCAGGAACAAATTGCACGTTGTCAGGCTGAACAAGTGGCTGCTTTGATGCAAAGTCAGCAGATGGGTAGACGAAAGCATTTGGGTTGGCAA
GGTTGTTGACTGCTGGTATGACGGTAGGTTCCTGTGCTGCGCTTGACTTGGGAACTTTAGGAGCA