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Detailed information on CNT30189392


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 1e-101

BLAST vs NONCODE:
NONMEST001181, E-value = 3e-70

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30722378Secale cerealeTriticum spelta59.1174.394.01451forward
CNT30150050Secale cerealeBrachypodium distachyon60.6834.692.44463forward

Expression of CNT30189392

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MPSLSWILALTLSMVSDDSTSRVMVLPVRVFTKICMPPRRRRTRCRVDSFWIL*

>peptide 2 (42 aa)
MRRCWSGGMPSLSWILALTLSMVSDDSTSRVMVLPVSVFTKIC

>peptide 3 (37 aa)
QKATIYQASNSSAKRNIHKGHDLPDKNQQQISTSRFI*

>peptide 4 (64 aa)
RKPQYIKQAIQAQKGIFIKATICQIKTNSKLAQADLSEVYSLLNDTAVPATVSTNSYHGDSIVH*

Sequence

>CNT30189392
CAGAAAGCCACAATATATCAAGCAAGCAATTCAAGCGCAAAAAGGAATATTCATAAAGGCCACGATTTGCCAGATAAAAACCAACAGCAAATTAGCACAA
GCAGATTTATCTGAAGTCTATTCACTACTTAATGATACTGCTGTGCCAGCAACGGTTTCAACCAACAGTTACCACGGGGACTCAATAGTTCATTAAACCA
ACACAGTAGGACTGACACGAACGAGATAACAGTTCAAATGAACGACAGGGCACCACCCACCGCACGACCAGGATAAACCAGCAGGTCAAACGCCAAGGCA
ATTACTGACCACCGCGGAGGCGGAGCACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGCGAGGGTCCGGCCATCCTCCAGCTGCTTGCCAGC
GAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGACGACTCAACCTCAAGGGTGATG
GTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATGCCACCACGCAGACGCAGGACAAGGTGCAGAGTGGACTCCTTCTGGATATTGTAGTCAGCGAGGG
TGCGGCCATCTTCTAACTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGT
GTCAGACGACTCAACCTCAAGGGTTATGGTCTTGCCTGTCAGTGTCTTCACAAAGATCTGCAT