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Detailed information on CNT30188823


BLAST search results

BLAST vs Swiss-Prot:
sp|Q4LB22|METK3_HORVU, E-value = 1e-71

BLAST vs NONCODE:
NONPOPT000587, E-value = 5e-17

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674420Secale cerealeSetaria viridis23.8255.890.59202forward
CNT30522677Secale cerealeSetaria italica39.2737.5488.59333forward
CNT30641080Secale cerealeNymphaea colorata35.1433.384.56298forward
CNT30549537Secale cerealeIpomoea triloba35.8545.6580.92304forward
CNT30303722Secale cerealeTriticum aestivum40.6856.9398.26345forward
CNT30225924Secale cerealeHordeum vulgare29.4844.497.6250forward
CNT30508528Secale cerealeSolanum lycopersicum15.0924.6685.16128forward
CNT3014405Secale cerealeZea mays33.6152.7887.02285forward
CNT30218668Secale cerealeKalanchoe fedtschenkoi24.2953.2383.5206forward
CNT3022439Secale cerealePopulus trichocarpa26.7734.7680.62227forward
CNT30574675Secale cerealeOryza barthii20.6438.886.86175forward
CNT30594881Secale cerealeEragrostis curvula9.9122.7690.4884forward

Expression of CNT30188823

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MNLFPPFFKSRLMLIIPGLKSKFSFTSLRISLSGILPVP*

>peptide 2 (39 aa)
MTVWKQYGNRITHGSLDSGRKSIMRGTTQHGSLDSGRAL*

>peptide 3 (32 aa)
MLLLTSHEQKDPTFVELERQQTKNNPNVMSCS*

>peptide 4 (39 aa)
MRGNYTKQNMKSESGGASDRANCTSPGSFSRLKKRRKNI*

Sequence

>CNT30188823
CTTTTACTTGAGTTGGGCTTACATTTACCAGTTGCACAAACCATGATTAAAAACCTTGAACAGTATATAAAGACATAAAGTACAGTACTGCTTAGAAGAA
TGACAGTTTGGAAACAATACGGCAATAGAATTACACATGGCTCTTTAGACTCTGGAAGAAAGAGCATTATGAGGGGAACTACACAACATGGCTCTTTAGA
CTCTGGAAGAGCGTTATGAGGGGAAACTACACAAAACAGAATATGAAAAGTGAAAGTGGCGGAGCGAGTGACCGAGCAAACTGCACATCACCCGGCAGTT
TCAGCAGACTGAAAAAGAGAAGGAAAAATATATGAAACGATACACCAGTAAGAAAACTTAGCACTGATCATAGACGGCACGACCAGTGTAGCACGTCGTG
GTGATGTCGAATGCTTCTTCTTACTTCCCATGAGCAAAAGGATCCCACCTTTGTCGAACTTGAGAGGCAGCAGACCAAGAATAACCCCAATGTGATGTCT
TGTTCTTAGGCAGATGCCTTCTCGAACTTGAGGGGCTTCACCACCTCCCAGGTGAAGTCGGCATCATCGCGTCCAAAGTGACCGTAAGCAGCGGTCTTGA
TGAACCTGTTTCCACCTTTCTTCAAGTCCAGGTTGATGCTGATCATCCCTGGCCTGAAGTCAAAGTTCTCCTTCACGAGCTTGAGGATCTCCCTGTCGGG
GATCTTGCCGGTGCCGTAGGAGTCGACGAACACAGACAAAGGCTCAGGCACACCGATGGCGTATGAGATCTGCACAATGCAACGGCGTGCGAGGCCGCTG
GCGATGATGCTCTTGGCAGCCTGCCTGGCAATGTAGGCGCCACTGCGG