Detailed information on CNT30188720


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30670613Secale cerealeSetaria viridis31.0636.3485.82141forward
CNT30302990Secale cerealeTriticum aestivum12.7820.4296.5558forward
CNT309074Secale cerealeZea mays20.2631.9491.392forward

Expression of CNT30188720

Peptides detected in this lncRNA

>peptide 1 (36 aa)
STCISFHTQAHRTQHTNVTEIDQFQYIHNQRPSLHC*

>peptide 2 (38 aa)
MGLITQYYRPDTDSQLSYHSRNTFDTIRYVGGSKWMMH*

Sequence

>CNT30188720
AGAGCACATGCATTTCATTCCATACTCAGGCTCATAGAACGCAACACACCAATGTAACAGAGATAGATCAATTTCAGTATATACACAACCAAAGACCGTC
TCTTCACTGTTGAATTACTGGCAACAATGCCTTAGGTCACACATTATGCAGACCAGACTCAGACAACGTCACACAAACACCAGCTCCTTGCCATGGGTTT
GATCACACAATATTACAGACCAGATACAGATAGTCAGCTTAGCTATCACAGCCGAAACACGTTCGACACGATACGATACGTAGGTGGCTCCAAATGGATG
ATGCACTAGCAGGTAACCAGTCAGGAGCATCGCCGAGTACATGCTCGCCAGGGAGAAGATGAGGTGGAAGAACGAGTAGGAGTACGTCACCGGCTTGGGC
ACATCCTTGGTTTCCTCCTCATCGGCCTTGCTGAAGGGCAGCAGTGGCTTGTCG