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Detailed information on CNT30188323


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30224849Secale cerealeHordeum vulgare61.1103.7985.81465forward
CNT30394125Secale cerealeTriticum turgidum58.7490.1292.84447forward
CNT3059857Secale cerealeArabidopsis lyrata8.6720.2592.4266forward
CNT30446643Secale cerealeSaccharum spontaneum12.8820.2593.8898forward
CNT30135839Secale cerealeLolium perenne12.4840.0896.8495forward
CNT30722036Secale cerealeTriticum spelta53.7595.1292.91409forward

Expression of CNT30188323

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MYFLIFQMNSWLSVDNLLSPFQGYYVLVNIF*

>peptide 2 (42 aa)
WLGFLPDLYKYRERAILVHLRRRSKQIPIPSPPAAPPPPPPR*

Sequence

>CNT30188323
CCTGGTTAGGGTTCCTTCCCGACCTTTATAAGTACCGCGAGAGAGCCATCCTCGTACACCTCCGCCGCCGCAGCAAGCAAATACCCATACCCAGTCCGCC
TGCCGCGCCGCCGCCTCCGCCTCCGCGATGAGGGCCAAGTGGAAGAAGAAGAGAATGAGGAGGCTTAAGAGGAAGCGCCGAAAGATGAGGCAGCGATCCA
AGTAGGCGAACAACGAGGAGAAAGCCTAACCTTGTATCATTGCACCAGTCTGTTGGGATGATAGGTTCTTTTGGTTCCTGATATGTCTGGGTTGTTCTGA
TATTTGGGGATGCCAACCCTTGTAACATGAGGATAATTATATGCTTCCCTTAAAGGCTGGATATTCGGCTTAAGAAATATTATCGTTTATTTTTGATTTG
TTGCCCTGCCTGTACCTTCTTTTCTGGCCTGCATCTGATGTTTTGGTCTTAGTTGAGTGTTATTTCAGTTTGTTTTGTTTCCGTTCGCTCTTGAAAGCAT
ATTTACAACTGGAATTGTTCGCTTCTTGAAAGCATATTTACAACTCGAATTGCCTGATTCATCTGCAGCTCGGGTCTATAGTCTGTTTCAGTAGGCGAAT
AAAGAGAGAACAAATTTAATGTATTTTCTTATCTTTCAGATGAACTCTTGGCTTAGTGTTGATAATCTTTTGTCTCCATTCCAGGGGTACTATGTACTTG
TGAATATTTTTTAGAAAAATAGAGTTATGTGCAATCTTTCTCCTCTTTTTTATAAGGGCCA