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Detailed information on CNT30188310


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6L3B0|PSBZ_SACHY, E-value = 1e-21

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693553Secale cerealeOryza sativa34.9319.6986.64277forward
CNT30673559Secale cerealeSetaria viridis14.7541.290.6117reverse complement
CNT30730493Secale cerealeCorchorus capsularis14.3830.3289.47114forward
CNT30492211Secale cerealeOlea europaea15.6425.5783.06124reverse complement
CNT30300556Secale cerealeTriticum aestivum45.421.0698.06360forward
CNT30220912Secale cerealeHordeum vulgare52.3379.295.66415forward
CNT30556052Secale cerealeOryza glaberrima24.4677.9184.54194reverse complement
CNT30369712Secale cerealeOryza glumipatula14.6347.9393.1116reverse complement
CNT30109402Secale cerealeOryza longistaminata34.9321.0386.28277forward
CNT30116403Secale cerealeOryza nivara15.0152.6596.64119reverse complement
CNT30551174Secale cerealeOryza brachyantha27.3674.3287.1217reverse complement

Expression of CNT30188310

Peptides detected in this lncRNA

>peptide 1 (63 aa)
PPGSTFYVWVDRFISFSIILEFSFFYYLSMNILMGMEFHNTEREELAIRNANCVLIRLTILIF*

>peptide 2 (49 aa)
MMYRKIQHFYYLTNHQEKQIQGVPSNKVDYIFDPSLNQNCKKIQEVGGV*

>peptide 3 (41 aa)
MREFRIATRKTSPIHNDVPENTTFLLFDQPSGEANTRGTIK*

>peptide 4 (39 aa)
SAWVDLLCLGRPFHFIFYYIRVFLFLLSVNEYSNGNGIS*

>peptide 5 (39 aa)
MGVRRDYLLFISQAGIADPVSVYTVYRDISKRNLYLISF*

Sequence

>CNT30188310
ATCCGCCTGGGTCGACCTTCTATGTCTGGGTCGACCGTTTCATTTCATTTTCTATTATATTAGAGTTTTCCTTTTTTTATTATCTGTCAATGAATATTCT
AATGGGAATGGAATTTCATAATACTGAAAGAGAAGAGCTAGCAATTCGGAACGCAAATTGCGTTTTAATACGTCTCACTATTCTAATTTTTTAGAAGAAA
TGGCCTTTATTATTTCTTTTTTATGGGGTTAATAAATATTAACCAAATTTCATTTAAGAAATGAGAGAATTCAGAATAGCTACGAGAAAGACTAGTCCAA
TCCATAATGATGTACCGGAAAATACAACATTTTTATTATTTGACCAACCATCAGGAGAAGCAAATACAAGGGGTACCATCAAATAAAGTTGACTACATAT
TTGATCCCTCACTTAACCAAAATTGTAAAAAAATACAAGAAGTAGGAGGGGTTTAATCATGAATCCATAGATTCTTCTCTTTAATTCAAATTTATTACTT
AAACCGCTTTTTTATTTGGATATGGGGGTGAGAAGAGATTATTTACTCTTTATTTCACAAGCGGGTATAGCGGATCCTGTATCCGTGTATACAGTATACA
GAGATATATCGAAAAGGAACTTGTATCTGATATCTTTCTAGAGGCTAATATAATAAATCTTTTTATTTTTTATGTGGCTATGTTCTATTTGTAGGAGTAA
AATAAGGATTAGGCTGTGGAGAGATGGCTGAGTGGTTGATAGCTCCGGTCTTGAAAACCGGTATAGTTCTAGGAACTATCGAGGGTTCGAATC