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Detailed information on CNT30188309


BLAST search results

BLAST vs Swiss-Prot:
sp|P07369|CB2G_SOLLC, E-value = 1e-144

BLAST vs NONCODE:
NONMTRT001605, E-value = 3e-27

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30224540Secale cerealeHordeum vulgare99.4263.3991.87689forward
CNT30131530Secale cerealeLolium perenne80.8168.3887.32560forward

Expression of CNT30188309

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MACTKKPNMENMARRPFLTSFTLSSANASGSSARPSGSKLPPG*

>peptide 2 (29 aa)
MAQRQWITSSSRFLAKVSGSADSPAVSQP*

>peptide 3 (31 aa)
LVMLLQRIPVIYNMVVQIRLHHGTLHREHSL*

>peptide 4 (38 aa)
MPQGRRQGRADQSYRPGRVGRRSHRVVHRQCGSPRRRP*

Sequence

>CNT30188309
ATCTTGTAATGCTTTTGCAAAGAATCCCCGTAATTTACAACATGGTAGTACAAATTAGACTGCACCACGGCACACTTCACCGCGAGCATAGTCTCTAGGA
CAACCTATTTCCCAGGAACAAAGTTGGTGGCGAATGCCCAAGCATTGTTGTTGACAGGGTCGGAGAGGTGGTCAGCGAGGTTCTCGAGTGGACCCTTGCC
AGTGACAATGGCTTGCACAAAGAAACCGAACATGGAGAACATGGCTAGGCGACCGTTCTTGACCTCCTTCACCTTGAGCTCGGCGAATGCCTCAGGGTCG
TCGGCAAGGCCGAGCGGATCAAAGCTACCGCCCGGGTAGAGTGGGTCGACGATCTCACCGAGTGGTCCACCGGCAATGCGGTAGCCCTCGACGGCGCCCA
TGAGCACGACCTGACAAGCCCAGATGGCAAGGATACTTTGCGCGTGCACAAGGCTTGGGTTGCCGAGGTAGTCGAGTCCACCCTCGCTGAAGATCTGGGA
TCCGGCCTTGAACCAAACGGCCTCGCCAAACTTAACGCCGTTGCGGGCAAGCAGCTCGGGGAAGACGCAACCAAGTGCGCCAAGCATGGCCCAGCGGCAG
TGGATCACCTCCAGCTCACGGTTCTTGGCAAAGGTCTCGGGGTCGGCCGACAGCCCAGCGGTGTCCCAGCCGTAGTCGCCAGGGAACTCACCA