Detailed information on CNT30188155


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10HD0|CB23_ORYSJ, E-value = 4e-64

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30297942Secale cerealeTriticum aestivum83.2498.3296.93586forward
CNT30395135Secale cerealeTriticum turgidum84.9484.5896.49598forward
CNT30684741Secale cerealeTriticum urartu94.4678.7994.14665forward
CNT30369818Secale cerealeOryza glumipatula55.455.8788.21390forward

Expression of CNT30188155

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MVQINTQSTCSYTLIHDVQVHMHISSDGRTDGWLNSKHI*

>peptide 2 (32 aa)
SWPVGCPYAVANVPFHELEVPYTPCMPVDDLE*

>peptide 3 (50 aa)
VGPLDVRMPLRMSRFMSLKYHIRHACQLMILSNVLNDTRFFHPFARAPRA*

>peptide 4 (40 aa)
MACTKKPNMENMARRPFLSSFTLSSAAVMLCACTRLGLPR*

>peptide 5 (30 aa)
MPFLDRISGNTHPRAPSIAHREWITSSSRFL

Sequence

>CNT30188155
TAGTTGGCCCGTTGGATGTCCGTATGCCGTTGCGAATGTCCCGTTTCATGAGCTTGAAGTACCATATACGCCATGCATGCCAGTTGATGATCTTGAGTAA
TGTACTAAATGACACACGATTCTTCCATCCATTTGCTCGTGCACCTCGTGCTTAATTAATTTACATTGCGCACAGCCAGCGAGAGGACCTCTCGCTCGCT
CGATCATGGTACAAATAAACACACAAAGTACGTGCAGCTACACGTTGATCCACGACGTACAAGTACACATGCATATCTCGTCCGATGGACGGACGGACGG
ATGGCTAAACAGTAAACACATTTAGCTTCCGGGGGCGAAGTTGGTGGCGAAGGCCCAGGCGTTGTTGTTGACTGGGTCGGCGACGTGGTCGAAGAGGTTC
TCAACGGGCCCCTTCCCGGTGACGATGGCCTGCACGAAGAAGCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGAGCTCCTTCACCTTGAGCTCGG
CGGCGGTGATGCTCTGCGCGTGCACCAGGTTGGGGTTGCCCAGGTAGTCGAGGCCGCCCTCGGAGAAGATCTGGGCGCCGGCCTTGAACCACACTGCCTC
GCCGAACTTGATGCCGTTCTTGGACAGGATCTCCGGGAACACGCACCCCAGGGCGCCGAGCATCGCCCACCGCGAGTGGATCACCTCCAGCTCCCGGTTC
TTGG