Detailed information on CNT30188104


BLAST search results

BLAST vs Swiss-Prot:
sp|P10707|CB2D_SOLLC, E-value = 1e-29

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30298483Secale cerealeTriticum aestivum62.2468.9896.02427forward
CNT30223925Secale cerealeHordeum vulgare61.0877.1690.21419forward
CNT30440221Secale cerealeAegilops tauschii26.8259.1696.74184forward
CNT30722048Secale cerealeTriticum spelta52.1984.8392.74358forward

Expression of CNT30188104

Peptides detected in this lncRNA

>peptide 1 (86 aa)
MACTKKPNMENMARRPFLSSFTLSSAAVSGSSARPSGSKSPTLRTRSSRRGAVPRKLVVWCSADAAISLVAGAACELSEMDWWMVCV

>peptide 2 (32 aa)
SWPVGCPYAVANVPFHELEVPYTPCMPVDDLE*

>peptide 3 (39 aa)
MVQINTQSTCSYTLIHDVQVHMHISSDGRTDGWLNSKHI*

>peptide 4 (50 aa)
VGPLDVRMPLRMSRFMSLKYHIRHACQLMILSNVLNDTRFFHPFARAPRA*

Sequence

>CNT30188104
TAGTTGGCCCGTTGGATGTCCGTATGCCGTTGCGAATGTCCCGTTTCATGAGCTTGAAGTACCATATACGCCATGCATGCCAGTTGATGATCTTGAGTAA
TGTACTAAATGACACACGATTCTTCCATCCATTTGCTCGTGCACCTCGTGCTTAATTAATTTACATTGCGCACAGCCAGCGAGAGGACCTCTCGCTCGCT
CGATCATGGTACAAATAAACACACAAAGTACGTGCAGCTACACGTTGATCCACGACGTACAAGTACACATGCATATCTCGTCCGATGGACGGACGGACGG
ATGGCTAAACAGTAAACACATTTAGCTTCCGGGGGCGAAGTTGGTGGCGAAGGCCCAGGCGTTGTTGTTGACTGGGTCGGCGACGTGGTCGAAGAGGTTC
TCAACGGGCCCCTTCCCGGTGACGATGGCCTGCACGAAGAAGCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGAGCTCCTTCACCTTGAGCTCGG
CGGCGGTGTCGGGGTCGTCGGCGAGGCCAAGCGGGTCGAAGTCGCCGACGCTGCGGACGAGGTCATCGCGGCGCGGGGCGGTGCCGAGGAAGCTGGTCGT
CTGGTGCAGCGCCGACGCGGCCATTTCGCTGGTGGCTGGGGCTGCCTGCGAGCTCAGTGAGATGGACTGGTGGATGGTGTGTGTTT