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Detailed information on CNT30188078


BLAST search results

BLAST vs Swiss-Prot:
sp|P13192|PSAF_HORVU, E-value = 1e-84

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678495Secale cerealeSetaria viridis10.5325.6995.1102forward
CNT30525128Secale cerealePhaseolus vulgaris18.0640.684175forward
CNT30709011Secale cerealeGlycine max18.9920.2682.07184forward
CNT30224070Secale cerealeHordeum vulgare13.1156.9599.21127forward
CNT30562394Secale cerealeActinidia chinensis17.2326.5180.84167forward
CNT30137478Secale cerealeLolium perenne6.7125.5995.3865reverse complement
CNT308929Secale cerealeZea mays25.4982.0694.74247forward
CNT30684883Secale cerealeTriticum urartu19.6131.5697.89190forward
CNT30349302Secale cerealeEragrostis tef12.4921.892.56121forward
CNT30620828Secale cerealeCajanus cajan13.5259.8283.21131forward
CNT30148341Secale cerealeBrachypodium distachyon11.0436.5294.39107forward
CNT30174403Secale cerealeVigna angularis19.0926.6282.7185forward

Expression of CNT30188078

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MILSAPTPSPHRSTPQALFHPPLPICQSKQEHKIH*

>peptide 2 (87 aa)
MVSFFTDCFSRLANALDSLHGVRPAMSAAAGGGEVAAEERRTDESASAAEKVLMEVEIEGVVLSADAEQETERRAGGRARRGLAAKAV

>peptide 3 (39 aa)
MSASSTTRSPLMSSRKAASSTSMMISRMAGFFSPLTAMR*

>peptide 4 (34 aa)
MQSSPDMGLTSQPCTHAWQLISIRCRRRRRRGRR*

Sequence

>CNT30188078
ATCAACTTTTTTTTCTAAGTTGCGTTTCCTATGTATGTTGACACAGTTCCACTCATAGTATGCTGTGCATCATGAAATCGTTCTCAACAATTTGAACAAT
GGTAAAACACACACATGTGAAGAGAGAACACAATAGTTATACAAGATTGGGTTCAGTTTCTTAAATACAAGAGAGCTTCCATTCCTCCATGATCCTATCA
GCTCCTACACCAAGCCCACACAGATCGACACCACAAGCCCTCTTCCATCCTCCGCTGCCCATCTGCCAAAGCAAACAAGAACACAAGATACATTAATTAA
TTGTATATGACACAGATGCAGAGCAGATCACATTCGGGCATGGATGCAGAGCTCACCTGACATGGGACTGACTAGCCAACCATGCACGCACGCATGGCAG
CTAATTAGTATCCGATGTCGGCGTCGTCGACGACGAGGTCGCCGTTGATGAGCTCGCGGAAGGCGGCGAGCTCGACGTCGATGATGATCTCCCGCATGGC
GGGCTTCTTCTCGCCGCTGACGGCGATGAGGTAGCTGCGGCCGACCCACCCGATCCACCCCGCGATGTAGAGGAAGAGCACGCCGGGGGTGATGAACTCG
CCCCAGTGCCGCTGGTCGCCGCTGACGATGAGGTGGGGCAGGCCGTCGGAGCCGCACAGCAGGCCGAACTTGCCGTAGTTCTCGAACCGGCGCTTGGTCT
TGTCGATGGTGAGCTTCTTCACCGACTGCTTCTCCCGCTTGGCGAACGCCTTGGACTCCTTGCACGGGGTCAGGCCGGCGATGTCGGCGGCCGCCGGCGG
CGGGGAGGTGGCGGCGGAGGAGAGGAGGACGGACGAGAGCGCCAGCGCGGCCGAGAAGGTCTTGATGGAGGTGGAGATTGAGGGGGTGGTGTTGTCCGCG
GACGCGGAGCAGGAGACGGAGAGGCGCGCCGGCGGGCGCGCCAGGCGCGGCTTGGCGGCGAAGGCCGTG