CANTATAdb - search

Detailed information on CNT30187975

BLAST search results

BLAST vs Swiss-Prot:
sp|P10707|CB2D_SOLLC, E-value = 1e-40

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30552306	Secale cereale	Oryza glaberrima	39.55	51.24	95.47	331	forward
CNT30369202	Secale cereale	Oryza glumipatula	53.88	50.62	92.9	451	forward
CNT30115779	Secale cereale	Oryza nivara	40.86	65.14	95.32	342	forward
CNT30603587	Secale cereale	Oryza punctata	40.74	67.13	95.31	341	forward

Expression of CNT30187975

Peptides detected in this lncRNA

>peptide 1 (74 aa)
MAWTKNPNMENMARRPFLISFTLSSANASGSSASSSGKTQPSAPSMAQRQWITSSSRFLAKVSGSADSPAVSQP*

>peptide 2 (56 aa)
MVMRPSPKGAALEAFTGVPAIAGEESAMVAAAIARCGLASFLASGELRLTVGGAGGR

Sequence

>CNT30187975
TTAAGCAGAAGAACAGAGATGCCTTGATTAATCTGAGAAAATAGCCAGATATTACATAAACACCATCTTTTAGTGTACACACACCAACTCATCATCTCGA
CTCGCCCTCACATGCAACATCTATCAGTCCGGACTCAGTCTCAAAACGGAAAGACATGCAGCAGCAGCATCCATCAGCCATGAAGTTGTCGGCCATGCCC
GCGCGTGCACGCACGCGCTAGAGCTAGAGAGCTGACCGCGCTCACTTGCCGGGGACGAAGTTGGTGGCGAAGGCCCAGGCGTTGTTGTTGACGGGGTCGG
CGAGGTGGTCGGCGAGGTTCTCGAGGGGCCCCTTGCCGGTGACGATGGCCTGGACGAAGAACCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGAT
CTCCTTCACCTTGAGCTCCGCGAACGCCTCGGGGTCCTCGGCGAGCAGCTCGGGGAAGACGCAGCCCAGCGCGCCGAGCATGGCCCAGCGGCAGTGGATC
ACCTCCAGCTCCCGGTTCTTGGCGAAGGTCTCGGGGTCGGCCGACAGCCCCGCGGTGTCCCAGCCGTAGTCCCCGGGGAACTCGCCGGTGAGGTAGAGCA
CGCGGTCGGAGCCGTACCACGGGCTGCTGGAGGCGGCCACCTTGGGCTTGCCCGCCGTCTTGCGCATGGTGATGCGGCCCTCGCCGAAGGGCGCCGCCCT
GGAGGCCTTCACCGGGGTGCCGGCCATCGCCGGGGAGGAGAGCGCCATGGTCGCGGCCGCCATTGCGCGCTGCGGACTCGCTAGCTTTCTTGCTTCGGGT
GAGCTGAGGCTGACTGTAGGAGGCGCTGGTGGTCGTT