Detailed information on CNT30187954


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30223824Secale cerealeHordeum vulgare16.2532.5482.93246forward
CNT30444168Secale cerealeAegilops tauschii10.8351.4185.37164forward

Expression of CNT30187954

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MVTCNSSLGNRGDSTGGLHFWWYSSCTES*

>peptide 2 (35 aa)
LGRSSRRLHMPPHPPHHRPPQPAISSAAVEGGHRC*

>peptide 3 (40 aa)
MALLKALFSGELGLYLGENSRSLIGQRQRLCIVSFLEALL*

>peptide 4 (56 aa)
MAGSFFFLLFFFFLFWLCVSLMSFDILLVQRPGIIGIFAILIYSLCWKKSNTNNEYD

>peptide 5 (69 aa)
MRGAPTAGGNPAPRRPSLLSPAHMAQARARPVGWVEVDLPSMMVACPDLVLPNLSPNNLLPPSHRSTGY*

>peptide 6 (41 aa)
MLGQPRAVAASSGSSRLRWIWAMAGNARRAHGWWESCSTAA*

>peptide 7 (41 aa)
PGSLLQATPHASPSATPQASPAGHLLCRRRRRSSMLTAAAG*

>peptide 8 (72 aa)
WVAPPGDSTCLPIRHTTGLPSRPSPLPPSKEVIDVDGGGGMNLFGSPPPSSSILANLHLPSDLILEDPVRGC*

Sequence

>CNT30187954
CCTGGGTCGCTCCTCCAGGCGACTCCACATGCCTCCCCATCCGCCACACCACAGGCCTCCCCAGCCGGCCATCTCCTCTGCCGCCGTCGAAGGAGGTCAT
CGATGTTGACGGCGGCGGCGGGATGAACCTGTTCGGCTCTCCTCCCCCTTCATCTTCAATATTGGCCAACCTTCATCTGCCCTCAGATCTGATTCTTGAG
GATCCTGTTCGTGGATGCTAGGGCAACCCCGGGCGGTGGCGGCCTCGTCTGGCTCAAGCCGGCTCCGCTGGATCTGGGCCATGGCAGGCAATGCGAGGCG
CGCCCACGGCTGGTGGGAATCCTGCTCCACGGCGGCCTAGCCTTCTCTCGCCGGCGCACATGGCTCAGGCGAGGGCCCGTCCGGTGGGCTGGGTCGAGGT
GGACCTCCCTTCCATGATGGTGGCTTGCCCCGATCTGGTTCTGCCGAATCTTAGCCCTAATAATCTTCTTCCGCCAAGTCATCGCTCTACCGGATATTGA
CCTCTTGGCCGGCGGGAATCCTGCTCGACAGCGGCCTAGCCTTCTCTCGCCGGCGCATACGGCTCAGGCGTGGGCCCGTCCGGCGGTGGGCTGGGTCGAG
TTGGACCTCCCTTCCATGATGGTCGCTTTCCTCAATCTGGTTCTGCCGGATCTTAGCCCTAATAATCTTCTTCCGCCAAGTCATCACTCTACCGGATATT
GACTTCTTGGATCTGATTGCTGACGAGTTCTGGTCATCCATGTCGAAGATCCATATGGATTGGCGTATTTCGCCCCTGGATATCTAGACCGGAAAGGTTC
TGGTCGCACGCGCTCATTTTATCAGCCAACAAGGCCTTACGAGGACGGGGCGTGAAGCTTCACTTTCTTATCCATGCCATGGGACATGTCTAAATTAAGA
TTCTCAAGGCATTGATAGAGGTGGGGAAAGTCATGGCGGCTGCGATTGGAGGTCATAACCTTCGGTGAAAGGGCGTACTGGATGCGATGAAGATTGTGTG
CCAGGTGTATGGTGACTTGTAATAGCAGCCTCGGCAACCGGGGCGACAGCACTGGAGGACTACATTTTTGGTGGTACTCCTCGTGTACCGAGTCTTGATC
CCCAGGGTGAAAACCCAAGGTCTGACCTTTATTGGTTGTACCTGGCAATGGCCTTGTTGAAGGCATTGTTTTCGGGTGAACTCGGACTTTATCTGGGTGA
AAACTCAAGATCTTTGATCGGGCAACGACAGCGTTTGTGCATTGTTTCCTTTTTGGAGGCGTTGCTTTAGGAGAACGTCTTTTGTATTCCGGGTATTGTC
TTTGGTGGTGGTTAGAGTGTTGCTGCTACTAGTATTGTTCACCATGGCTGGGTCTTTTTTCTTCCTTTTGTTTTTCTTTTTTCTTTTTTGGTTGTGTGTA
TCCTTGATGTCTTTTGACATCTTGTTGGTACAGAGGCCGGGTATAATTGGTATCTTCGCGATATTAATATATTCCCTTTGTTGGAAAAAAAGCAATACCA
ATAATGAGTACGAT