Detailed information on CNT30187765


BLAST search results

BLAST vs Swiss-Prot:
sp|P68540|COX1_AEGCO, E-value = 5e-111

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30402950Secale cerealeBeta vulgaris58.0239.1186.84456forward
CNT30555227Secale cerealeOryza glaberrima60.5641.8397.06476forward
CNT30435024Secale cerealeAegilops tauschii34.2210098.51269forward
CNT30605231Secale cerealeGossypium raimondii57.6312.1192.94453forward
CNT30682609Secale cerealeTriticum urartu67.8120.6198.87533forward
CNT30371457Secale cerealeOryza glumipatula60.5620.8597.06476forward
CNT30481012Secale cerealeChara braunii31.6823.2983.53249forward

Expression of CNT30187765

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MGKKVRLTPKKVIQKWIWPKVSGYVRPKI*

>peptide 2 (61 aa)
NDTPYHEMGPFQLEFRTATTLFKRVEVQSCHFPIIPFQQKLCDRSPHAHSSIPPLPYRYRV*

>peptide 3 (35 aa)
MTRNNYTKTTSVSKVKGFPHTYLYETSFIVRRGFF*

>peptide 4 (71 aa)
TIPHIMRWVHSNWNSVRLQLFLNESKSSLVTFPSSLFNRNYVIEAHMPTLLSPLYPTGTGYRGPRDLHDQK*

Sequence

>CNT30187765
TAACGATACCCCATATCATGAGATGGGTCCATTCCAATTGGAATTCCGTACGGCTACAACTCTTTTTAAACGAGTCGAAGTCCAGTCTTGTCACTTTCCC
ATCATCCCTTTTCAACAGAAACTATGTGATAGAAGCCCACATGCCCACTCTTCTATCCCCCCTCTACCCTACAGGTACAGGGTATAGGGGGCCTCGAGAT
CTCCATGACCAGAAATAACTACACAAAAACAACTTCTGTTTCCAAAGTGAAGGGATTTCCCCACACCTATCTCTATGAAACTTCCTTCATAGTTAGGAGA
GGTTTTTTTTAGCTTTTTGTCTCTTTTACCGCAGGAAGTTCCCCAAAAGTATGAAAGGCCGGAGGACTTTGTACCAACCATTCTAGTGTGGTTGGATTCT
GTTCAACAGCCCAAGGACTTTCCGCACATTTTTGGTTCTTTCCACTGCTTGAAGTGATTGCGACAACTACGAAGAAACGACGAATCCCAACTACGGATAT
ATAAGAACCGAAACTGCTCAGAGCATTCCATCCGGCGTAAGCATCTGGATAATCTGGAATACGACGTGGCATACCCGAAAGCCCTAAGAAATGCATGGGA
AAGAAGGTCAGATTAACCCCGAAAAAAGTGATCCAAAAATGGATTTGGCCTAAAGTTTCAGGATATGTCCGACCAAAGATTTAACCCACCCAATAGTAAA
ATCCAGCAAATAAAGCAAAAACGGCTCCCATAGAAAGTACATAATGGAAATGTACAACCACATAATAAGTATCATGTAGAGCAATG