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Detailed information on CNT30187643


BLAST search results

BLAST vs Swiss-Prot:
sp|P13192|PSAF_HORVU, E-value = 3e-83

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522442Secale cerealeSetaria italica15.9620.7489.35169forward
CNT30641545Secale cerealeNymphaea colorata25.9732.3585.45275forward
CNT30629005Secale cerealeVigna unguiculata28.6151.9780.53303forward
CNT30300474Secale cerealeTriticum aestivum43.0641.4996.05456forward
CNT30394054Secale cerealeTriticum turgidum45.1448.3391.21478forward
CNT3086176Secale cerealeVigna radiata33.4343.7680.23354forward
CNT30664762Secale cerealeTriticum dicoccoides43.1577.0795.19457forward
CNT30579105Secale cerealeEchinochloa crusgalli24.1724.2494.53256forward

Expression of CNT30187643

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MILSAPTPSPHRSTPQALFHPPLPICQSKQEHKIH*

>peptide 2 (36 aa)
MYVKFAIVDTSGLHSCKKSTFFSKLRFLCMLTQFHS*

>peptide 3 (95 aa)
MVAWMASAGAESGAYFLSDEVSFFTDCFSRLANALDSLHGVRPAMSAAAGGGEVAMEAVRAAIAACPWRARGRAGVWRGFGSRSVEGGVGGVVLVC

>peptide 4 (35 aa)
MQSSPDMGLTSQPCTHAWQLISIRCRRRRRRARRR*

Sequence

>CNT30187643
GTGAGTAGCAACGCAGATCTTTCGTATTGCTCCTTGTGGACCATATGTATGTTAAATTTGCTATAGTAGACACATCTGGCTTGCATTCTTGTAAAAAATC
AACTTTTTTTTCTAAGTTGCGTTTCCTATGTATGTTGACACAGTTCCACTCATAGTATGCTGTGCATCATGAAATCGTTCTCAACAATTTGAACAATGGT
AAAACACACACATGTGAAGAGAGAACACAATAGTTATACAAGATTGGGTTCAGTTTCTTAAATACAAGAGAGCTTCCATTCCTCCATGATCCTATCAGCT
CCTACACCAAGCCCACACAGATCGACACCACAAGCCCTCTTCCATCCTCCGCTGCCCATCTGCCAAAGCAAACAAGAACACAAGATACATTAATTAATTG
TATATGACACAGATGCAGAGCAGATCACATTCGGGCATGGATGCAGAGCTCACCTGACATGGGACTGACTAGCCAACCATGCACGCACGCATGGCAGCTA
ATTAGTATCCGATGTCGGCGTCGTCGACGACGAGCTCGACGTCGATGATGATCTCCCGCATGGCGGGCTTCTTCTCGCCGCTGACGGCGATGAGGTAGCT
GCGGCCGACCCACCCGATCCACCCCGCGATGTAGAGGAAGAGCACGCCGGGGGTGATGAACTCGCCCCAGTGCCGCTGGTCGCCGCTGACGATGAGGTGG
GGCAGGCCGTCGGAGCCGCACAGCAGGCCGAACTTGCCGTAGTTCTCGAACCGGCGCTTGGTCTTGTCGATGGTGGCCTGGATGGCGAGCGCGGGCGCGG
AGTCCGGCGCGTACTTCTTGAGCGACGAGGTGAGCTTCTTCACCGACTGCTTCTCCCGCTTGGCGAACGCCTTGGACTCCTTGCACGGGGTCAGGCCGGC
GATGTCGGCGGCCGCCGGCGGCGGGGAGGTGGCGATGGAGGCGGTGAGGGCGGCCATTGCTGCGTGTCCTTGGCGCGCGCGCGGGCGGGCGGGCGTGTGG
AGGGGGTTTGGTTCGCGATCGGTGGAGGGTGGGGTGGGGGGAGTAGTTTTAGTTTGCGT