« Back to Secale cereale search


Detailed information on CNT30187563


BLAST search results

BLAST vs Swiss-Prot:
sp|P07398|RBS3_WHEAT, E-value = 7e-61

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30393324Secale cerealeTriticum turgidum70.652.2397.09550forward

Expression of CNT30187563

Peptides detected in this lncRNA

>peptide 1 (79 aa)
MRPCIYIATDSTHIRACFLESCWYMNMDIHIFLGTNKKDKWTRKTQSNVRVDKTAMALYMRPVVSELFMPCRTPRSPVA*

>peptide 2 (54 aa)
MKLTHCTWRMLSNPMMRTYASGYSFLTSSTSLITCVASVHPNIGSFHIVQYRPS*

Sequence

>CNT30187563
CACTTATTTTAGGAAGGAGAGAGTAATAAGCACGGCGGTGGAGATATTTTCCATTGGTTACCATTAAAACGTATATAGTGACATATTGTATAATATTATG
CGTCCGTGCATATACATAGCCACCGATAGCACTCACATACGAGCATGCTTTCTCGAGTCATGTTGGTACATGAACATGGACATACACATATTCTTAGGAA
CAAATAAGAAAGATAAATGGACAAGGAAAACCCAAAGCAATGTCAGAGTTGACAAAACTGCAATGGCACTTTATATGCGGCCCGTGGTGAGTGAGCTGTT
TATGCCTTGCCGGACTCCTCGCAGCCCGGTGGCTTGAAGGCGATGAAGCTGACGCACTGCACCTGGCGCATGTTGTCGAATCCGATGATGCGGACGTACG
CGTCAGGGTACTCCTTCTTGACCTCCTCCACCTCGTTGATCACCTGTGTGGCGTCGGTGCATCCGAACATAGGCAGCTTCCACATTGTCCAGTACCGGCC
ATCGTAGTACCCGGGAGACGCGTTGTGCTCACGGAAGATGAACCCAACCTTGCTGAACTCGAGGCAAGGCTAGCGCCGTTGGAGCGGCGGCTGACAGGGA
GGCCGGCGGTGGACTTGAGCCCCTGGAAAGGAGCGACGGAGGTGGCCGACGAGGCCATCACGGTAGGGGCCATCGCTGTACTATGTAGGTATATAGCTTG
CTAGGAGGAGGCACTCTGGCTTGAGGACTGGTGTGTTGGGCCAGCAAGGCTTATATAACCCTTGGGCCCTTGCTGAACA