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Detailed information on CNT30187536


BLAST search results

BLAST vs Swiss-Prot:
sp|P09755|CB22_SOYBN, E-value = 8e-51

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696173Secale cerealeOryza sativa40.6943.4994.35354forward
CNT30301046Secale cerealeTriticum aestivum71.9575.796.33626forward
CNT30554920Secale cerealeOryza glaberrima40.848.1794.37355forward
CNT30251938Secale cerealeAvena sativa64.4870.9293.23561forward
CNT30665949Secale cerealeTriticum dicoccoides65.6367.1897.9571forward
CNT30473044Secale cerealeSaccharum spontaneum56.2155.5190.39489forward
CNT30129613Secale cerealeCorymbia citriodora48.0557.190.67418forward
CNT30685781Secale cerealeTriticum urartu62.1862.0496.3541forward
CNT30108138Secale cerealeOryza longistaminata47.9351.4894.48417forward
CNT30103236Secale cerealeOryza rufipogon47.9342.2594.72417forward
CNT30574663Secale cerealeOryza barthii55.6358.8192.36484forward

Expression of CNT30187536

Peptides detected in this lncRNA

>peptide 1 (74 aa)
MAWTKNPNMENMARRPFLISFTLSSANASGSSASSSGKTQPSAPSMAQRQWITSSSRFLAKVSGSADSPAVSQP*

>peptide 2 (56 aa)
MVMRPSPKGAALEAFTGVPAIAGEESAMVAAAIARCGLASFLASGELRLTVGGAGGR

Sequence

>CNT30187536
TTAAGCAGAAGAACAGAGATGCCTTGATTAATCTGAGAAAATAGCCAGATATTACATAAACACCATCTTTTAGTGTACACACACCAACTCATCATCTCGA
CTCGCCCTCACATGCAACATCTATCAGTCCGGACTCAGTCTCAAAACGGAAAGACATGCAGCAGCAGCATCCATCAGCCATGAAGTTGTCGGCCATGCCC
GCGCGTGCACGCACGCGCTAGAGCTAGAGAGCTGACCGCGCTCACTTGCCGGGGACGAAGTTGGTGGCGAAGGCCCAGGCGTTGTTGTTGACGGGGTCGG
CGAGGTGGTCGGCGAGGTTCTCGAGGGGCCCCTTGCCGGTGACGATGGCCTGGACGAAGAACCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGAT
CTCCTTCACCTTGAGCTCCGCGAACGCCTCGGGGTCCTCGGCGAGCAGCTCGGGGAAGACGCAGCCCAGCGCGCCGAGCATGGCCCAGCGGCAGTGGATC
ACCTCCAGCTCCCGGTTCTTGGCGAAGGTCTCGGGGTCGGCCGACAGCCCCGCGGTGTCCCAGCCGTAGTCCCCGGGGAACTCGCCGGTGAGGTAGCTCG
GCGGGTCGCCGGAGAGCGGGCCGAGGTAGAGCACGCGGTCGGAGCCGTACCACGGGCTGCTGGAGGCGGCCACCTTGGGCTTGCCCGCCGTCTTGCGCAT
GGTGATGCGGCCCTCGCCGAAGGGCGCCGCCCTGGAGGCCTTCACCGGGGTGCCGGCCATCGCCGGGGAGGAGAGCGCCATGGTCGCGGCCGCCATTGCG
CGCTGCGGACTCGCTAGCTTTCTTGCTTCGGGTGAGCTGAGGCTGACTGTAGGAGGCGCTGGTGGTCGTT