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Detailed information on CNT30187493


BLAST search results

BLAST vs Swiss-Prot:
sp|P08834|NU1M_CITLA, E-value = 1e-51

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690827Secale cerealeOryza sativa99.1216.3298.67450forward
CNT30501657Secale cerealeCoffea canephora96.78.9392.48439forward
CNT30220178Secale cerealeHordeum vulgare41.857.6998.95190forward
CNT30401101Secale cerealeTriticum turgidum10037.399.78454forward
CNT30592620Secale cerealeMusa acuminata93.3918.6591.75424forward
CNT30437037Secale cerealeAegilops tauschii75.9999.7198.55345forward
CNT30664530Secale cerealeTriticum dicoccoides78.8510099.72358forward
CNT30598800Secale cerealeFraxinus excelsior81.2899.1993.5369forward
CNT30228621Secale cerealeAnanas comosus58.5963.9496.99266reverse complement
CNT30207841Secale cerealeHelianthus annuus97.5816.5490.52443forward
CNT30687453Secale cerealeTriticum urartu1008.4997.8454forward
CNT30480890Secale cerealeArabidopsis halleri71.5997.693.54325forward
CNT30354619Secale cerealeLactuca sativa94.2725.6991.59428forward
CNT30574571Secale cerealeVitis vinifera41.853.0996.32190forward
CNT3052251Secale cerealeAmborella trichopoda41.853.2491.58190forward
CNT3099667Secale cerealeOryza rufipogon58.3711.5699.62265forward
CNT30115707Secale cerealeOryza nivara99.1210.3398.67450forward
CNT30557320Secale cerealePanicum hallii87.8989.8699399forward
CNT30335348Secale cerealeCynara cardunculus78.6398.6291.04357forward

Expression of CNT30187493

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MNRTSTSSVTPTALTALYPNPTCSGPGSSRISSSVSGPWKLGSIRL

Sequence

>CNT30187493
TTCTACATTATAGCCTGCAACTAATTCAGCTTCCGCTTCTGGGAGATCAGACGGAGCTCGATTAGTTTCTGCTAGACGAGGAATAAGGAACATAACCAAT
ACGGGGAACAGGGGAATACCGGACCATATCTGCTTTTGCGCCATGACAATCTCACTCGAATTACAGGGACCTACACATATTAGTACAGTAATAAGAATAA
GACCAATAGAGACTTCATAAGGGACCATTTGAGCTGCAGATCGTAATGCTCCTAGAAAGGCATATTTCGAATATAGAGGACGTTCCCAACAATCCACGAG
AATATCATACCCAACTATGAACCGTACGAGCACATCCTCTGTCACCCCCACCGCGCTTACGGCTCTATACCCCAACCCAACTTGCTCTGGCCCTGGGTCC
TCCCGCATCTCTTCCTCGGTAAGCGGACCGTGGAAGCTGGGGAGTATCCGCTTG