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Detailed information on CNT30187285


BLAST search results

BLAST vs Swiss-Prot:
sp|Q39176|ERLI1_ARATH, E-value = 3e-15

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690852Secale cerealeOryza sativa27.5742.1587.25102forward
CNT30629257Secale cerealeVigna unguiculata24.8615.9782.6192forward
CNT30305359Secale cerealeTriticum aestivum34.3214.6586.61127reverse complement
CNT30589645Secale cerealeMusa acuminata27.5718.8287.25102forward
CNT30553184Secale cerealeOryza glaberrima25.1418.988.1793forward
CNT30439196Secale cerealeAegilops tauschii22.9720.7395.2985forward
CNT30447788Secale cerealeSaccharum spontaneum26.4916.990.8298forward
CNT30367039Secale cerealeSorghum bicolor31.622090.6117forward
CNT30369755Secale cerealeOryza glumipatula25.1415.2588.1793forward
CNT30106366Secale cerealeOryza longistaminata21.3525.4888.6179forward
CNT30575905Secale cerealeOryza barthii25.1414.9388.1793forward
CNT30115994Secale cerealeOryza nivara31.0815.9787.83115forward
CNT30334725Secale cerealeCynara cardunculus20.8111.1385.7177forward

Expression of CNT30187285

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MTYIPEMLHWMGLLGGALEAGGDVLAAVVDEEAEVDGHVEVDAQDVGLERRAQAH

>peptide 2 (32 aa)
VERLCNCNTLIGAPGTYIWVQKGATTSTIQMI*

>peptide 3 (34 aa)
MGTKGGHDLNYTDDLGGGSKTQYTRTQYTQQSLL*

Sequence

>CNT30187285
TGTGGAAAGGCTATGTAATTGCAATACATTGATCGGTGCACCAGGCACGTATATATGGGTACAAAAGGGGGCCACGACCTCAACTATACAGATGATTTAG
GAGGTGGGTCCAAGACACAATATACACGTACACAATATACTCAACAATCACTACTTTAGTGATGATATATAAAACGTCTTGTATTAATTTACAGAGGGTT
AGTCAATGACATATATCCCGGAGATGTTGCATTGGATGGGTCTTCTAGGAGGGGCACTCGAAGCCGGAGGGGACGTTCTTGCCGCAGTAGTTGACGAGGA
GGCTGAGGTCGACGGGCACGTTGAGGTTGATGCCCAGGATGTTGGCCTTGAGCGCCGTGCACAGGCACAC