Detailed information on CNT30186982


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30291726Secale cerealeTriticum aestivum30.7542.392.72151reverse complement
CNT30387575Secale cerealeTriticum turgidum20.574.7789.11101forward
CNT30659703Secale cerealeTriticum dicoccoides26.2723.6789.15129forward

Expression of CNT30186982

Peptides detected in this lncRNA

>peptide 1 (49 aa)
LDKVWHGNCEELRIVLAGKREISKIAIHIAKALEFLHHGGVTNSDSWRC*

>peptide 2 (49 aa)
MLLSPEGRGGGTQAGRRGVFGCGGGPTRAVVRILWSEKIFSRIHKFCWS*

>peptide 3 (62 aa)
MEMLKLQTSSSRDFEAQMVPIDAAKSGRSRRRHPSWTTGRLRMWRRSDQSSGSNTMVRKNLF*

Sequence

>CNT30186982
CTTAGACAAAGTGTGGCATGGCAATTGTGAGGAACTGAGGATAGTCTTAGCTGGGAAAAGAGAAATAAGTAAGATAGCAATTCACATTGCAAAGGCACTT
GAATTTCTGCATCATGGTGGTGTCACCAATTCTGATTCATGGAGATGTTAAAGCTGCAAACATCCTCCTCTCGGGATTTTGAGGCCCAGATGGTGCCCAT
TGATGCTGCTAAGTCCGGAAGGTCGCGGAGGAGGCACCCAAGCTGGACGACGGGGCGTCTTCGGATGTGGAGGAGGTCCGACCAGAGCAGTGGTTCGAAT
ACTATGGTCAGAAAAAATCTTTTCTAGAATCCACAAGTTTTGCTGGTCTTGAAGAATGTATTAAGTTCATTGCAAACTTAAAGTTCAGAGAAGATGGTAT
TCAAGAAAGGGCGCCGCCTGTCCCTCACCGTCCATCGTCTCTAGACACAACGTCATCAGCAGCACCTGCTATCTATATATATGAACTATCT