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Detailed information on CNT30186872


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76H85|H4_SILLA, E-value = 2e-52

BLAST vs NONCODE:
NONGMAT000508, E-value = 4e-47

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696576Secale cerealeOryza sativa43.2947.8992.13216forward
CNT30616210Secale cerealeSesamum indicum59.7223.8283.22298forward
CNT3069058Secale cerealeQuercus suber47.927.3182.01239forward
CNT30196946Secale cerealePisum sativum28.0619.5582.86140forward
CNT30712284Secale cerealeGlycine max32.2634.2679.5161forward
CNT30299936Secale cerealeTriticum aestivum66.1360.4496.97330forward
CNT30394717Secale cerealeTriticum turgidum66.1365.4896.97330forward
CNT3086297Secale cerealeVigna radiata58.1224.9483.79290forward
CNT30553196Secale cerealeOryza glaberrima43.2938.7194.44216forward
CNT30441099Secale cerealeAegilops tauschii95.7992.6495.19478forward
CNT30252143Secale cerealeAvena sativa63.5330.6696.53317forward
CNT30664208Secale cerealeTriticum dicoccoides66.1365.6197.27330forward
CNT3059678Secale cerealeArabidopsis lyrata31.6632.8584.18158forward
CNT30135649Secale cerealeLolium perenne63.5361.7995.27317forward
CNT3015042Secale cerealeZea mays43.2936.4994.91216forward
CNT30229571Secale cerealeAnanas comosus30.0636.4190.67150forward
CNT30687044Secale cerealeTriticum urartu63.5331.1196.21317forward
CNT30620798Secale cerealeCajanus cajan31.0629.6983.23155forward
CNT30596905Secale cerealeOryza meridionalis43.4935.6991.71217forward
CNT30357929Secale cerealeLactuca sativa56.9163.3980.28284forward
CNT30325970Secale cerealeAsparagus officinalis46.2933.4883.55231forward
CNT30331117Secale cerealeDioscorea rotundata61.3232.3180.39306forward
CNT30147953Secale cerealeBrachypodium distachyon62.1235.6795.48310forward
CNT30577582Secale cerealeOryza barthii40.8832.0892.65204forward
CNT30581397Secale cerealeEchinochloa crusgalli43.6937.1492.66218forward
CNT30117618Secale cerealeOryza nivara43.294894.91216forward

Expression of CNT30186872

Peptides detected in this lncRNA

>peptide 1 (60 aa)
MSPEMRFTPPRRARRRIAGLVMPWMLSRSTFRWRLAPPLPSPLPPLPRPDIFSLLSFFLR*

Sequence

>CNT30186872
CAGCGAACAAGCAGCATACATCATAAATTACATCGATCACCATGAACACTGAACAACACCTAAATACTACTAATCTGAATATCTGATCAAGTGATGCGAG
CTGGATTCGCCTCGCCGGAGCCTAGCCTCCGAATCCGTAGAGGGTGCGTCCCTGGCGCTTGAGGGCGTAGACGACGTCCATGGCAGTGACGGTCTTGCGG
CGGGCGTGCTCGGTGTAGGTGACGGCGTCGCGGATGACGTTCTCGAGGAAGATCTTGAGCACGCCGCGGGTCTCCTCGTAGATGAGCCCCGAGATGCGCT
TCACGCCGCCCCGGCGCGCCAGACGCCGGATCGCCGGCTTGGTGATGCCCTGGATGTTGTCGCGCAGCACCTTCCGGTGGCGCTTGGCGCCGCCCTTGCC
GAGCCCCTTGCCTCCCTTGCCGCGGCCCGACATCTTCTCGCTTCTCTCTTTCTTCCTCCGGTGATGTTGACTTGTCTTCGTCAGGTGTAGATCGCTGCG