Detailed information on CNT30186776


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30526965Secale cerealeEucalyptus grandis1.426.0589.2956reverse complement
CNT30226544Secale cerealeHordeum vulgare3.8426.7496.75154forward
CNT30205718Secale cerealeHelianthus annuus3.5935.6489.58144forward
CNT30484006Secale cerealeChara braunii2.4927.5584100forward
CNT3024232Secale cerealePopulus trichocarpa3.6471.2286.3146forward

Expression of CNT30186776

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MNLESFSWFGFIVYMGSYIFFTQNSKFTENICRTIL*

>peptide 2 (37 aa)
MAVIFCCVRLVNVYNGHMTTSWMLKPHGGNLLLCATC*

>peptide 3 (52 aa)
MHKFSILWAITLVACVSCCMLIGKAKELQLISSTYKIFNANYIEYYGQSHHT*

>peptide 4 (57 aa)
MERATGLSLQRIKLAKAGAVIDLCTMTMMALDPTAMDRARAVATATTTRNGRGSWPR*

>peptide 5 (50 aa)
MYPILLWEKGSSFGPTVCEIFTMLVDSFKFFGSNLTFFMNVKKKNHTCTH*

>peptide 6 (52 aa)
MLIISNITANPITPRSWCSSLGAQYTWTEGVVRMPTRQCCSVLEEIAQTTYF*

>peptide 7 (46 aa)
MAVIFCCVRLVNVYNGHMTTSWMLKPHGGNIFVRLDDVNNGFMATT*

>peptide 8 (47 aa)
MVQLLRCPIHLDGGSSANAHAAVLFSSRGNCTNHLLLMLVLHGTLTL*

>peptide 9 (39 aa)
MLMPAGCGCWLIFLFPSLRGSFLLQTSGPYLFFINLIKMA

>peptide 10 (61 aa)
MTSSMSTDVVIFRATALIRMWSLLTPTEVRERLVTGSFRWEMVARVIFNRFGWRSCNRIGN*

>peptide 11 (71 aa)
MVSKAFRKGALAVRPVQIGEDERSQAIFVFSLKLKGETLLLILFLKIDESNDISVLISAASSPSESNFFLP*

>peptide 12 (32 aa)
MQNNPINHTCIQYYYGKKAAHLDQQFVRYLQC*

>peptide 13 (34 aa)
MPSIFPFTKLKHQRCMPVVCRRLWQSIGCSMSVA*

>peptide 14 (34 aa)
MSNPSFGWVNKIPYKWIQFVSAPRQKKRAASAPN*

>peptide 15 (40 aa)
MEHSLYRFVAQNIFWCNLLQVCLIHHLVGLTRFLTSGFSL*

>peptide 16 (67 aa)
MTTICCELAMNHVSQVDVLADGVYQSLLHEPSSIYWDVRTRHRRAHLATGNKQQLLETRATSASFAQ*

>peptide 17 (90 aa)
TRGDRFGPCWPSSGLPTRDVGGPGGSQTPQGRVRRRGLHCGAPPPVWYPKRFEKERWPFDLYKLGKTKEARPFSFFHSNSREKLCFLSFF*

>peptide 18 (92 aa)
PEVIDLAPVGPRVVSPREMWEDREARKRLKAECADEDYIAELRHRYGIQSVSKRSAGRSTCTNWGRRKKPGHFRFFTQTQGRNFASYPFFKD*

Sequence

>CNT30186776
GACCCGAGGTGATAGATTTGGCCCCTGTTGGCCCTCGAGTGGTCTCCCCACGCGAGATGTGGGAGGACCGGGAGGCTCGCAAACGCCTCAAGGCAGAGTG
CGCCGACGAGGATTACATTGCGGAGCTCCGCCACCGGTATGGTATCCAAAGCGTTTCGAAAAGGAGCGCTGGCCGTTCGACCTGTACAAATTGGGGAAGA
CGAAAGAAGCCAGGCCATTTTCGTTTTTTCACTCAAACTCAAGGGAGAAACTTTGCTTCTTATCCTTTTTTTAAAGATTGACGAATCAAATGATATTTCT
GTTCTAATTTCTGCCGCTTCTTCTCCCTCTGAATCAAACTTTTTTTTGCCATAATGTGCCGTTGCTATTATTACCAAGTATATGGTTCTAATCCTAGATG
GAAAAATAAATAGAAAAAGAAATCTAAAAAGGCAGATCCTCCCTCACTATCAAGAGTAATGAACTAGGTGCTGATACAGTACAAAAAAACAAACTAAATT
AACCAAACTTGCCTGATGTTGAGGCAATTAAGAAAGCTGCATAAGTGAATATATAACCCACGAAAAAGTGAGCTAATCCAACCAATCTTGCTTGCACAAT
GGAAAGAGCCACGGGCTTATCTCTCCAGCGAATTAAATTAGCTAAAGCTGGTGCAGTCATCGATCTTTGCACAATGACAATGATGGCTCTAGATCCGACG
GCGATGGATCGGGCGAGGGCGGTGGCAACCGCAACAACGACAAGGAATGGGAGAGGATCGTGGCCAAGATAATGGATAGTCATGCGGATATAGTTTATAC
TAGCAGTTTGAAACAAGTTTGGTGGGCGAGTTTGAATCAAATGTGAATGAATTTGTGTTCAATTTTTGAAGGAGTTAAGTTTAAGGGATTGGCTAGAAAC
CTCTAATCTTTAGAGGATCAAATTTGAATGTATCAGTTAGAGATGCTCTAAGAGAATTGTTAATAGTATAGCCAACTGCTGGCTATAGGCCATTACTATG
TCATCTATAGCCCATCTTATAGCCAATATGTACAATGGTTGATTAGAAGAGTGTACTACTTTTTTATTATATGACCCACCTTTCACTCTCACAAAGTTCC
TAGGAGCATGTGCTAGAGCTGGCTCTTCACCAAGAGCCTGCTTACCTTCTCTCTCCTCTTTTCTTTCCTCCAACTAAGCAAGAATATACTAGTTTATTTT
TTATAGCCAGCTCACTCAGCTCTATTGTACTTGCTCTAAGCCATAGAGATAGTGATCTTTAGCTGTAGTTTGTGCATTATAATTGTTCCTTTTGGGGTTT
TCCGTTCTTGGACTTTGAAAGTACTGTCTCCTAATTAAATGAAAGCAGCTCCATGTCTGCACTAAAAGTACTCCCTCCGTCCAGGTGTATTGGGCATCTT
AGCGATTTTAAAATTTCCAAATGAGTAAGGCACCAAGGATTTAAATCAGCCTCGTATCACTCCCGTGCCTCGTTAGCTTCACCCTCATGCACAAGTTTTC
AATCTTATGGGCAATAACTCTGGTTGCATGTGTTTCATGCTGCATGTTGATTGGTAAGGCAAAGGAATTGCAATTAATTAGCTCAACTTACAAGATTTTT
AATGCTAATTATATCGAATATTACGGCCAATCCCATCACACCTAGATCATGGTGCAGCTCCTTAGGTGCCCAATACACCTGGACGGAGGGAGTAGTGCGA
ATGCCCACGCGGCAGTGTTGTTCAGTTCTCGAGGAAATTGCACAAACCACCTACTTTTGATGCTAGTTTTGCATGGAACACTCACTTTATAGGTTTGTTG
CACAAAACATATTTTGGTGTAATTTGTTGCAGGTATGTCTAATCCATCATTTGGTTGGGTTAACAAGATTCCTTACAAGTGGATTCAGTTTGTAAGTGCA
CCGCGGCAAAAAAAACGTGCCGCATCAGCACCCAACTAGAACTGTTAATATCTCACAATTATTTGCTCCAATTGAAAATATTTAAAAAAAATATTAGTGA
GTGCACACATGATTTATTGTTTATTGTTTTTTTTGAAAATGTTAAACTAGAACAAAAATATTGAACGAGCCAACTAACATTGCCAAACCGCCTAGTATTT
GGATGTAAAAACCTCATGGCGGTAATCTTTTGTTGTGTGCGACTTGTTAATGTCTATAATGGTCACATGACAACTTCTTGGATGCTAAAACCTCATGGCG
GTAATCTTTTGTTGTGTGCGACTTGTTAATGTCTATAATGGTCACATGACAACTTCTTGGATGCTAAAACCTCATGGCGGTAATATTTTCGTGAGACTTG
ATGATGTGAATAATGGCTTTATGGCAACCACTTAGATGCTAAAGCCTGACAACAACGACAATATCTGCCATATCTTGGTGCTACTGATTTTATTTTATGA
ATACCATGCCTATTTATGAATCATTTTAGATTTGTGTAGCAATCTTATGTTTTTCACATGAAAGTTTGTGGTGTGCTAACTTAGATGTAACCAGTAATGA
ATCTGGAAAGTTTCAGCTGGTTTGGATTCATAGTTTACATGGGCTCATACATTTTTTTTACTCAAAATTCAAAATTTACAGAAAATATATGCAGAACAAT
CCTATAAACCACACATGTATCCAATATTATTATGGGAAAAAGGCAGCTCATTTGGACCAACAGTTTGTGAGATATTTACAATGTTAGTTGACTCGTTCAA
ATTTTTTGGTTCAAATTTAACATTTTTTATGAATGTAAAAAAAAAAAATCATACATGCACTCACTAATATTCAGCAGTGTCACCATCTTGTGCGCAAACT
TTCTTCCTGATGCCTTCCATATTTCCATTCACAAAGCTTAAGCACCAGCGATGCATGCCAGTTGTTTGTCGACGACTTTGGCAATCTATAGGTTGCTCTA
TGAGTGTGGCCTAGCTAGTCTTGATTGAATTAACATAATAAAGAATCAAGTTTAAGTTGAGCACTACAGAGTGAAGCATGCGTATATATATAACACCATG
CACGGTGGCCTGGAAAAATAGGCAACATCTATACTTATACTAATTAGAGACTCCATAGAAATCCCATGTTAATTAGAAATTAGGAGCCGTTTATCTGGTG
GGACCAAGTTATTACGGTGTAGATCTCACGATATATCTTATATATTTATCCACGTCAACCTTAATGTCTAAAACATTATATTTAGGAAAAAAAGAACCGA
GAAGACTCCTTTCACCATAATTTTCCCGTAGACTTTAAAAAACATAGAAGATTCCTTTCATCATACGCTTTCCATAGGGTTTGCAATGTTTTCATATTAT
AAAGATAACCCATTGAAACCTCTCTCTTCGTCAGGTTAAGCCGGCCACGCTGCCGCTGACTTCTATACGTCAAAATTGGCTATGGGCATGCATGAGCCGC
TACCGGAAAGATGTGTACATGGGTTGTGTTTCCAGCCGCAAAGGTTAATCAAGTGCCTGCTCAATTAAGAGGCCGACACTGCAGGCCAGTATGACAACGA
TCTGTTGCGAGCTTGCGATGAATCATGTCTCTCAAGTGGATGTGTTAGCGGACGGAGTATATCAATCTCTGTTACATGAGCCAAGTTCAATTTACTGGGA
CGTACGTACAAGACATCGGCGAGCACATCTAGCCACCGGAAACAAGCAACAACTTCTCGAAACAAGAGCAACATCAGCATCGTTTGCCCAGTGATGACAT
CATCAATGTCTACAGATGTGGTTATTTTCCGAGCCACTGCATTGATCCGTATGTGGTCGCTACTCACTCCGACGGAGGTCAGGGAGCGTTTGGTTACTGG
ATCTTTCCGGTGGGAGATGGTAGCACGGGTTATCTTCAACCGGTTTGGATGGCGGTCATGTAATAGAATAGGCAATTAGTTTCCCTATCATGCTTATGCC
TGCCGGTTGTGGCTGTTGGCTGATTTTCTTGTTTCCTTCGCTCCGTGGGAGCTTTCTACTGCAGACTTCGGGACCTTATTTATTTTTTATTAACTTAATA
AAGATGGCCG