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Detailed information on CNT30186769


BLAST search results

BLAST vs Swiss-Prot:
sp|P07398|RBS3_WHEAT, E-value = 3e-77

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672509Secale cerealeSetaria viridis34.1736.9383.08260forward
CNT30300848Secale cerealeTriticum aestivum67.8182.1796.51516forward
CNT30224976Secale cerealeHordeum vulgare74.970.5495.96570forward
CNT30664831Secale cerealeTriticum dicoccoides64.2677.8797.14489forward
CNT30685331Secale cerealeTriticum urartu67.8176.3397.09516forward
CNT30721860Secale cerealeTriticum spelta55.8574.0497.18425forward
CNT30557165Secale cerealePanicum hallii36.1463.6684.36275forward

Expression of CNT30186769

Peptides detected in this lncRNA

>peptide 1 (79 aa)
MRPCIYIATDSTHIRACFLESCWYMNMDIHIFLGTNKKDKWTRKTQSNVRVDKTAMALYMRPVVSELFMPCRTPRSPVA*

>peptide 2 (54 aa)
MKLTHCTWRMLSNPMMRTYASGYSFLTSSTSLITCVASVHPNIGSFHIVQYRPS*

Sequence

>CNT30186769
GTTACCATTAAAACGTATATAGTGACATATTGTATAATATTATGCGTCCGTGCATATACATAGCCACCGATAGCACTCACATACGAGCATGCTTTCTCGA
GTCATGTTGGTACATGAACATGGACATACACATATTCTTAGGAACAAATAAGAAAGATAAATGGACAAGGAAAACCCAAAGCAATGTCAGAGTTGACAAA
ACTGCAATGGCACTTTATATGCGGCCCGTGGTGAGTGAGCTGTTTATGCCTTGCCGGACTCCTCGCAGCCCGGTGGCTTGAAGGCGATGAAGCTGACGCA
CTGCACCTGGCGCATGTTGTCGAATCCGATGATGCGGACGTACGCGTCAGGGTACTCCTTCTTGACCTCCTCCACCTCGTTGATCACCTGTGTGGCGTCG
GTGCATCCGAACATAGGCAGCTTCCACATTGTCCAGTACCGGCCATCGTAGTACCCGGGAGACGCGTTGTGCTCACGGAAGATGAACCCAACCTTGCTGA
ACTCGAGGCAAGGCACCCACTTGGAGCGGATCAGGTAGTCGACCTGCTTGAGGAGGGCCTCCGTGGCCGGCGGTGGACTTGAGCCCCTGGAAAGGAGCGA
CGGAGGTGGCCGACGAGGCCATCACGGTAGGGGCCATCGCTGTACTATGTAGGTATATAGCTTGCTAGGAGGAGGCACTCTGGCTTGAGGACTGGTGTGT
TGGGCCAGCAAGGCTTATATAACCCTTGGGCCCTTGCTGAACAAGATGTGGAAGGAGTGGC