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Detailed information on CNT30186563


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SLN8|DBR_TOBAC, E-value = 3e-57

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30530009Secale cerealeEucalyptus grandis19.4834.9981.34134forward
CNT30150700Secale cerealeBrachypodium distachyon40.4162.0589.93278forward
CNT30101185Secale cerealeOryza rufipogon19.6221.5387.41135forward
CNT30594208Secale cerealeEragrostis curvula37.6592.1779.92259forward

Expression of CNT30186563

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MNPSMRMRLATMQKRLRTPSGCSRLYCEIIPHTATRPCSLMLSSTASSIAPPTFSK*

>peptide 2 (72 aa)
CVCYNASPKLALRLAVTRVQDEQHQLPFLNTAKDYTVVHSNFQVHLRRILFSPTFSKHWLKACTVLEFSKSD*

Sequence

>CNT30186563
TTTGCGTGTGTTATAATGCATCACCTAAACTGGCACTTCGCTTGGCCGTGACCAGAGTGCAGGATGAGCAGCATCAACTTCCCTTTTTAAATACTGCTAA
AGATTATACAGTAGTTCATTCCAACTTCCAGGTTCACCTACGTAGGATCCTGTTTTCTCCAACTTTCTCCAAACACTGGCTCAAAGCATGTACTGTATTA
GAATTCAGCAAGTCGGATTAAGTACCTCTATATATATATCTGAAATTCTGAATTCTGGTCTCTGAACGCAAACCAGTACTTCTCGACCCTGGAGGGCTCC
TGGCATGCGACGTCACTCCCGTGCGACGACCACCAGCTGCTTTCCGATGTTGCGCCCGTAGAAGAGCCCAATGAGCGCCGACGGGAAACTCTCGATCCCC
TCGGCGACGTCCTCCACGTAGGTGATCTTCCCCTCCTTGAGGTAACCAGCCATCTCCTCTTCAAACTTTCTGTAGTTGCCGTAATACTCCGTCACCATGA
ACCCCTCCATGCGGATGCGCTTGGCGACGATGCAGAAGAGGTTGCGCACACCCTCGGGCTGCTCCAGGTTGTACTGCGAGATCATCCCGCACACCGCCAC
CCGACCGTGCAGCCTCATGTTGAGCAGCACCGCATCCAGCATCGCACCGCCCACGTTCTCAAAGTAGATGTCGATGCCCTCTGGGAAG