Detailed information on CNT30186352


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30221938Secale cerealeHordeum vulgare61.6632.5194.18275forward
CNT30386725Secale cerealeTriticum turgidum44.845.8596200forward
CNT30443963Secale cerealeAegilops tauschii70.1814.6793.93313forward
CNT30666305Secale cerealeTriticum dicoccoides24.223.0990.74108reverse complement

Expression of CNT30186352

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MLRFKGLTSGIKASLSCTLSISCGQPKSVAAATPSASGYLPPSGLSSS

>peptide 2 (57 aa)
MYPQPLRLAWHCVRNKPTKIVPTLLVSSTTINAQVQRSNKWYQSLVILYPEHFLWAA*

Sequence

>CNT30186352
CACGTACGAGAGGTTACGGCGGTGCATGATGGATAAGTCTGTGTACTAGGGTCTTTGTGGGGCTGCAGCACATGGTCCTTGTGGCAGTTAGGATAGAGTT
CCTGACCATCAAGGACTGTCAGTTAGGATAGCATCTTAGACTAGCATCTTAGACTGGCATCTTAGCAGCATCTCAGCATATGCTTGGCTGGCTAGCAGCC
TATAAGTATGTATCCCCAACCCCTCAGGTTGGCATGGCATTGTGTGAGAAATAAACCAACGAAAATTGTCCCAACTCTCCTAGTGTCATCCACAACTATC
AATGCTCAGGTTCAAAGGTCTAACAAGTGGTATCAAAGCCTCGTTATCTTGTACCCTGAGCATTTCCTGTGGGCAGCCTAAGTCGGTAGCAGCAGCTACT
CCGTCTGCCTCTGGTTACCTCCCTCCCTCCGGACTGTCGAGCAGCA