CANTATAdb - search

Detailed information on CNT30186317

BLAST search results

BLAST vs Swiss-Prot:
sp|P12331|CB22_ORYSJ, E-value = 4e-152

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30299182	Secale cereale	Triticum aestivum	78.98	74.22	95.31	789	forward
CNT30552325	Secale cereale	Oryza glaberrima	36.94	39.55	92.14	369	forward
CNT30440100	Secale cereale	Aegilops tauschii	78.28	76.67	95.91	782	forward
CNT30240158	Secale cereale	Avena sativa	63.36	61.58	89.89	633	forward
CNT30665254	Secale cereale	Triticum dicoccoides	72.77	72.92	96.7	727	forward
CNT30685359	Secale cereale	Triticum urartu	52.45	52.19	97.14	524	forward
CNT30362364	Secale cereale	Sorghum bicolor	57.66	56.58	91.15	576	forward
CNT30596886	Secale cereale	Oryza meridionalis	57.46	56.39	92.16	574	forward
CNT30603531	Secale cereale	Oryza punctata	63.76	58.44	92.46	637	forward

Expression of CNT30186317

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MAWTKNPNMENMARRPFLISFTLSSANASGSSARPRGSKLPPG*

>peptide 2 (56 aa)
MVMRPSPKGAALEAFTGVPAIAGEESAMVAAAIARCGLASFLASGELRLTVGGAGGR

>peptide 3 (29 aa)
MAQRQWITSSSRFLAKVSGSADSPAVSQP*

Sequence

>CNT30186317
TAATCTGAGAAAATAGCCAGATATTACATAAACACCATCTTTTAGTGTACACACACCAACTCATCATCTCGACTCGCCCTCACATGCAACATCTATCAGT
CCGGACTCAGTCTCAAAACGGAAAGACATGCAGCAGCAGCATCCATCAGCCATGAAGTTGTCGGCCATGCCCGCGCGTGCACGCACGCGCTAGAGCTAGA
GAGCTGACCGCGCTCACTTGCCGGGGACGAAGTTGGTGGCGAAGGCCCAGGCGTTGTTGTTGACGGGGTCGGCGAGGTGGTCGGCGAGGTTCTCGAGGGG
CCCCTTGCCGGTGACGATGGCCTGGACGAAGAACCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGATCTCCTTCACCTTGAGCTCCGCGAACGCC
TCGGGGTCCTCGGCGAGGCCCAGGGGGTCGAAGCTGCCGCCGGGGTAGAGCGGGTCCACGATCTCGCCCAGCGGGCCGCCGGCCACGCGGTAGTCGAGCC
CGCCCTCGCTGAAGATCTGGGACCCGGCCTTGAACCACACGGCCTCGCCGAACTTGACGCCGTTGCGGGCGAGCAGCTCGGGGAAGACGCAGCCCAGCGC
GCCGAGCATGGCCCAGCGGCAGTGGATCACCTCCAGCTCCCGGTTCTTGGCGAAGGTCTCGGGGTCGGCCGACAGCCCCGCGGTGTCCCAGCCGTAGTCC
CCGGGGAACTCGCCGGTGAGGTAGCTCGGCGGGTCGCCGGAGAGCGGGCCGAGGTAGAGCACGCGGTCGGAGCCGTACCACGGGCTGCTGGAGGCGGCCA
CCTTGGGCTTGCCCGCCGTCTTGCGCATGGTGATGCGGCCCTCGCCGAAGGGCGCCGCCCTGGAGGCCTTCACCGGGGTGCCGGCCATCGCCGGGGAGGA
GAGCGCCATGGTCGCGGCCGCCATTGCGCGCTGCGGACTCGCTAGCTTTCTTGCTTCGGGTGAGCTGAGGCTGACTGTAGGAGGCGCTGGTGGTCGTTG