CANTATAdb - search

Detailed information on CNT30186310

BLAST search results

BLAST vs Swiss-Prot:
sp|P10707|CB2D_SOLLC, E-value = 1e-22

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30347916	Secale cereale	Eragrostis tef	38.54	37	88.29	222	forward

Expression of CNT30186310

Peptides detected in this lncRNA

>peptide 1 (63 aa)
MACTKKPNMENMARRPFLSSFTLSSAAVSGKLVVWCSADAAISLVAGAACELSEMDWWMVCVWV

>peptide 2 (39 aa)
MVQINTQSTCSYTLIHDVQVHMHISSDGRTDGWLNSKHI*

>peptide 3 (37 aa)
RFMSLKYHIRHACQLMILSNVLNDTRFFHPFARAPRA*

Sequence

>CNT30186310
CCGTTTCATGAGCTTGAAGTACCATATACGCCATGCATGCCAGTTGATGATCTTGAGTAATGTACTAAATGACACACGATTCTTCCATCCATTTGCTCGT
GCACCTCGTGCTTAATTAATTTACATTGCGCACAGCCAGCGAGAGGACCTCTCGCTCGCTCGATCATGGTACAAATAAACACACAAAGTACGTGCAGCTA
CACGTTGATCCACGACGTACAAGTACACATGCATATCTCGTCCGATGGACGGACGGACGGATGGCTAAACAGTAAACACATTTAGCTTCCGGGGGCGAAG
TTGGTGGCGAAGGCCCAGGCGTTGTTGTTGACTGGGTCGGCGACGTGGTCGAAGAGGTTCTCAACGGGCCCCTTCCCGGTGACGATGGCCTGCACGAAGA
AGCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGAGCTCCTTCACCTTGAGCTCGGCGGCGGTGTCGGGGAAGCTGGTCGTCTGGTGCAGCGCCGA
CGCGGCCATTTCGCTGGTGGCTGGGGCTGCCTGCGAGCTCAGTGAGATGGACTGGTGGATGGTGTGTGTTTGGGTG