« Back to Secale cereale search


Detailed information on CNT30186232


BLAST search results

BLAST vs Swiss-Prot:
sp|P13951|RBS_SINAL, E-value = 2e-21

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30555748Secale cerealeOryza glaberrima15.6639.6193.07101forward
CNT30666045Secale cerealeTriticum dicoccoides82.4896.294.55532forward
CNT30104556Secale cerealeOryza rufipogon14.5734.4393.6294forward

Expression of CNT30186232

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MKLTHCTWRMLSNPMMRTYASGYSFLTSSTSLITCVASVHPNIG*

>peptide 2 (79 aa)
MRPCIYIATDSTHIRACFLESCWYMNMDIHIFLGTNKKDKWTRKTQSNVRVDKTAMALYMRPVVSELFMPCRTPRSPVA*

Sequence

>CNT30186232
GTTACCATTAAAACGTATATAGTGACATATTGTATAATATTATGCGTCCGTGCATATACATAGCCACCGATAGCACTCACATACGAGCATGCTTTCTCGA
GTCATGTTGGTACATGAACATGGACATACACATATTCTTAGGAACAAATAAGAAAGATAAATGGACAAGGAAAACCCAAAGCAATGTCAGAGTTGACAAA
ACTGCAATGGCACTTTATATGCGGCCCGTGGTGAGTGAGCTGTTTATGCCTTGCCGGACTCCTCGCAGCCCGGTGGCTTGAAGGCGATGAAGCTGACGCA
CTGCACCTGGCGCATGTTGTCGAATCCGATGATGCGGACGTACGCGTCAGGGTACTCCTTCTTGACCTCCTCCACCTCGTTGATCACCTGTGTGGCGTCG
GTGCATCCGAACATAGGCTAGCGCCGTTGGAGCGGCGGCTGACAGGGAGGCCGGCGGTGGACTTGAGCCCCTGGAAAGGAGCGACGGAGGTGGCCGACGA
GGCCATCACGGTAGGGGCCATCGCTGTACTATGTAGGTATATAGCTTGCTAGGAGGAGGCACTCTGGCTTGAGGACTGGTGTGTTGGGCCAGCAAGGCTT
ATATAACCCTTGGGCCCTTGCTGAACAAGATGTGGAAGGAGTGGC