Detailed information on CNT30186142


BLAST search results

BLAST vs Swiss-Prot:
sp|P06353|H33_HORVU, E-value = 7e-33

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30125320Secale cerealePhyscomitrium patens29.027.6187.8474forward
CNT30605939Secale cerealeGossypium raimondii23.5310.899060forward
CNT30418220Secale cerealePapaver somniferum24.3114.4287.162forward
CNT3058538Secale cerealeAmborella trichopoda30.987.3284.8179forward
CNT30329187Secale cerealeDioscorea rotundata26.6717.5386.7668forward
CNT30114434Secale cerealeEutrema salsugineum31.3720.19080forward

Expression of CNT30186142

Peptides detected in this lncRNA

>peptide 1 (42 aa)
YQHQQAEDTRQERLLPSIVTGGDRKPRRAPPGCGGRAGCPWA*

>peptide 2 (70 aa)
HINTNRQKTPDRNDYYQVLSPAATENLGALPPDAAGELDVLGHDGDALGVDGAQVGVLEQPHQIGIGGLL*

>peptide 3 (31 aa)
MRRASWMSLGMMVTRLAWMAHRLVSSNSPTK*

Sequence

>CNT30186142
CATATCAACACCAACAGGCAGAAGACACCAGACAGGAACGACTACTACCAAGTATTGTCACCGGCGGCGACCGAAAACCTAGGCGCGCTCCCCCCGGATG
CGGCGGGCGAGCTGGATGTCCTTGGGCATGATGGTGACGCGCTTGGCGTGGATGGCGCACAGGTTGGTGTCCTCGAACAGCCCCACCAAATAGGCATCGG
CGGCCTCCTGTAGGGCGGACACAGCGGAGGACTGGAACCTGAGGTCGGTCTTGAA