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Detailed information on CNT30185762


BLAST search results

BLAST vs Swiss-Prot:
sp|Q39129|STR16_ARATH, E-value = 6e-15

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30303937Secale cerealeTriticum aestivum26.0159.6188.16245forward
CNT30225280Secale cerealeHordeum vulgare12.9559.898.36122forward
CNT30397702Secale cerealeTriticum turgidum26.9666.3287.8254forward
CNT30251799Secale cerealeAvena sativa22.6135.5682.16213forward
CNT30666649Secale cerealeTriticum dicoccoides14.4425.9591.91136forward

Expression of CNT30185762

Peptides detected in this lncRNA

>peptide 1 (29 aa)
RIRRKLLKMLLPTYTTCPNACCAITMHGN*

>peptide 2 (29 aa)
MMHIHTCLLFPWELIPPLILRKTLGNTTS*

>peptide 3 (70 aa)
MGRDGEVVGHVACTGNMALFEVLPHTHVHVPILLQGQQAARRLCVHALHRGARAASQGAHLWRIEQPEGKG

Sequence

>CNT30185762
GTCGAATTAGACGTAAGTTGTTGAAGATGCTCTTACCCACATATACTACTTGTCCAAATGCATGCTGTGCGATTACAATGCATGGTAATTAGATAACGAC
AGTAGCACATGATCACTTTGTCAACGTCATATGCACTAAATAACCCTTATAATTATTTAGGAGGTTACGATTGTTGACATTTTCTAGACCTCAGGAATAA
AACATTTTCTTTGGTTTTCTTTTTGCAAGATACATTCATAAAAGGGGAAATCAGTATTCAGCTAGTAGCACTATTGGTTGGAACAAAGTCCATGCCAAGA
ACTCATGATGCATATCCATACATGCCTTCTTTTTCCATGGGAATTAATTCCTCCTCTTATTCTTCGTAAGACGTTGGGTAATACTACATCGTAGCACTTA
TTCTAGATATGGAATTGATGGATCAGTGGTTGCTTGATGTCGACTGGGGATAGCTTGCACTCTTGAGCAAGGAGAGATAGCCGCCCTCGAGGTTCTTCAC
ATTCGTGAATCCCTGCAACATCAAACCGGTAACCAACAGGTCGACAAACCAATAAATCAGCAAAGGCAACCAACAAAGTGTCACGGAGCCACTTAGTACT
TACAGCGGCTACAAGGTCTGCGGTGGCGAGCCTGGACCGGATTCCAGAGCGGCAGCCAACAAGGAACCGGTCCTCCTTGGAGTGGAGGGCCGCAACCTGT
TCGACGAAGTCCGGGTTGCGCTCCTTGCCATGGGGCGTGACGGAGAGGTAGTAGGGCACGTTGCGTGCACCGGCAACATGGCCCTTTTCGAAGTCCTCCC
ACATACGCACGTCCACGTACCCATACTGCTCCAGGGCCAGCAGGCCGCACGCCGCCTCTGCGTCCACGCTCTCCACCGCGGCGCTCGTGCTGCTTCGCAG
GGAGCCCATCTATGGAGGATTGAGCAGCCAGAAGGAAAGGGC